G131960


Basic Information

Item Value
gene id G131960
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8862513 ~ 8864396 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU150085
AGACAATTCTTAGAAGTTACATCCTCTTGATTAACAATTCAGAAACTAAGATTTTGAGGATAAGCATTTACTCAGAAAATAATTGTCCTCGGATTTTTTATTTTTATTTCTTTTTTTTTAATCAGAATTCGTCTTCTTTTGCTTCTTCTTTAAGCAACCACAAATAATAAATAAATGTCCGTGTGATTGGCGATGAATCCGGTATTAAATGTTTGACATACCTTTCTTTAGCTCATAAGGTGAGTCTTTACAAAGATCTACCTGTGTTTGGCTTCTTACTTTGCTCTCTCTTACCAGAGCCTCGGCTCTGTTTAAAACAGTCTGGCTTAATCCATTGAAATGTGCCGTTGAGCTGGTGTTGGTGCCGTGGCTGCTGTGGAGGTGTCCGAAAGTGCTATAGTTCGTGTAGCCCGGGTAAAAAGGGGACGTGTAGTAAATAGGCCGAGAAAGGACCGTGCTATTAGGGAGAGGGCACTGAGGGGAGGAACGGCTCGGCGAGGCAGCGCTGGCTATGACTGTGCTTTGACCCAGCCCCGCGGCCTGTGGAGCCTCACTGCTCCCTTTGCACCTGTCCGAAGACGTGGCGATCTCGGCCAGAGACCAGAGTTTGGGTTTGGGCGCCGAAGGGGGAGAATGAATAACAGACGTTACGTTGCTGTTCCCCGTGCTTGCGGCGTGGCCCGGTTCTGAGGGCTTTTCTTGCGTAATGAGATCATTCCCTCTCTGTAGGACTGGGGGAGAGGAGGTGGTGGGTTTCGCTTGCTCTGCGAGCAAATCCGTCCGCTCCTCTGTGTCTTTTAATTCCGAGTCTGTCAAAGGTGGATCAAGATCTTTAGCATGAGTCTCGTCTTTAAATCTGTCGCATGGTATCTCCCCTGGGTTGATAAGTTTATGATCTGCCTCTGTGTCTGTGGAGTCTCCCTTGTCCGTGGGCTTGTTTGGCTCGTCGTCGTCGTTTTTCTCTAGATCAATGTTTTCGTCCTCTTCCTCGTCCTCGCTCCGGTTCCGTGGGGTCCAGGTCATCTTGTTCTCTTTCTTTAGCCTCCTTCTGGCGTTGGCGAACCAGGTGGACACTTGAGTGAGGGTCATTTTAGTAATGATGGCCAGCATGATCTTCTCGCCTTTGGTGGGGTACGGGTTTTTCCGGTGCTCGTTAAGCCAAGCTTTCAAAGTGGCTGTGGCGTCCCGGGTAGCATTCTTGCGGTAAGCTGGGTCTCCATACGGGTACGAGCCCAAGGGAGCAGCGTAAGGATGATACCCTATAGATCCGGCCATGCCTGTCGTGTGGTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU150085 True 1291 lncRNA 0.49 2 8862513 8864396

Neighbor

gene id symbol gene type direction distance location
CI01000026_08474877_08483134 NA coding upstream 379245 8474877 ~ 8483268 (+)
CI01000026_08454661_08461606 NA coding upstream 400592 8454661 ~ 8461921 (+)
CI01000026_08447474_08449558 TPPP3 coding upstream 411902 8447396 ~ 8450611 (+)
CI01000026_08421799_08434134 ZDHHC1 coding upstream 428320 8421683 ~ 8434193 (+)
CI01000026_08313929_08318869 ATP6V0D1, ATP6V0D1.L coding upstream 543622 8311795 ~ 8318891 (+)
CI01000026_08944583_08947981 NA coding downstream 80130 8944526 ~ 8947993 (+)
CI01000026_08950735_08960908 NA coding downstream 86267 8950663 ~ 8961146 (+)
CI01000026_09076625_09079154 IRX3A, IRX3 coding downstream 210820 9075216 ~ 9079338 (+)
CI01000026_09175446_09178464 NA coding downstream 310853 9175249 ~ 9178488 (+)
CI01000026_09339450_09352303 AKTIP coding downstream 475054 9339450 ~ 9353177 (+)
G132014 NA non-coding upstream 13071 8849237 ~ 8849442 (+)
G132009 NA non-coding upstream 27166 8834997 ~ 8835347 (+)
G131989 NA non-coding upstream 53740 8808498 ~ 8808773 (+)
G131987 NA non-coding upstream 54944 8807348 ~ 8807569 (+)
G131986 NA non-coding upstream 55203 8807108 ~ 8807310 (+)
G131963 NA non-coding downstream 22726 8887122 ~ 8888375 (+)
G132041 NA non-coding downstream 76079 8940475 ~ 8941239 (+)
G132043 NA non-coding downstream 78458 8942854 ~ 8943099 (+)
G132219 NA non-coding downstream 104755 8969151 ~ 8969490 (+)
G132275 NA non-coding downstream 147118 9011514 ~ 9058423 (+)
G131077 NA other upstream 355726 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 563099 8297857 ~ 8307629 (+)
G130967 NA other upstream 673440 8188374 ~ 8189073 (+)
G130552 NA other upstream 1765861 7095053 ~ 7096652 (+)
G128757 NA other upstream 2535728 6326196 ~ 6326785 (+)
G132667 NA other downstream 704343 9568739 ~ 9569160 (+)
G133192 NA other downstream 1295423 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 2206372 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 2380537 11241496 ~ 11246204 (+)
G133542 NA other downstream 2611721 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G32193 irx5 unknown NC_053114.1 CM020911.1 35771343 ~ 35773502 (+)
mexican tetra (Astyanax mexicanus) G31856 NA non-coding NC_035899.1 CM008302.1 69523958 ~ 69524587 (-)