G131963


Basic Information

Item Value
gene id G131963
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8887122 ~ 8888375 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU150093
AAATTTATTTGACATTACTGATTTAGTTATTTATTTATTTGACATAATTATTGAGCTCTTTTTATGGGGATTGTCATGTTACTCTTGTGTTTCAGCACTCCTGCAGCAGTCTGTAATGATGTTTTCTATTTCTGTTTCAGAGCAATTCTCACATAGACATGGACCACTAATGGGCATATCTATATTGGGATGTTTTGTATTGGACTACCAAAGTATGTACGTGAGTGTGTGTGTGTGTGTGTGCTGTTTGTTTGAGGGCTCTTGGGAATAGAGAGTGAGGGAAACAGTGAATAAATAGCACACACAGCTAGCCTCCCTCCTGTGTCTCATCACTCAGATCTGATTGCAACATAAACATGGCGTCTCAATCCAGACTGCCCTTTCTAAACGATTTTTCACACAGCCAAACAAAGGGCTAGTGAAAGCGTAATGACCTACACATCAAAACACTCGCATGCACAAACACACACACAAGCTGAGCGGGCTCAAAGCGGACCTCCTTGAGAGCTGACACGTTTTACAATGATGGCAAGACTACACACTCATGAATATACAAGCCCCTATCAATTAATAATGAATTAAACATGCTTTGTTAGAACCATGAAGGGCTAGTCTGGACCCACACCGAAGAGCGATAAACAAGAAAAGAATAACTAATTTGTGCACTTTATTGTAAGTTACTTAGATGTAAATGGAGAGATGTGAGGAAAATGTTCATTTCATTTTTATTTGTATGTTTTTAATTAATTGCGTTTGCCTTATTAGATCCCTCAGCGAGTTGATTATTATTATATTTTTTTTATTTATTTTTTTCACCAATCACCTGTTGATACCTGGTACGATGACATCACACCGGACCCTTCCAGGGCGTCTCCTTTATCGGTTAGGAGACATCTGGTAACTCAATGGTGGGGATTTTTAGATGAGTCCAGGCAGCTCTACATTAGAAGCTAAAAATAGAATTCAGTCTTCTGAAGTTGTGCCACAGGAAGACAGTAAACCCTTTCATTCTTTCCACCCCCTTTTTTTTAAACAGTCAACAAATCCGTCATATCTGGAGAACAGGTGGCACTTCCTCTGTGTCCCACAGTGTTGAAACTCAACTTAACATTTCTTAACATCACAGAGATGCTGCTAACGCTCCACGTGCCCTGTGCTGTATTTTTAGAAAGGAGAGCTGTGCTTTTCTTGGAAAACTGACTGAAGAGATTTACTAGGATGAAAATGAGGATGACTACGGTCAGATGAGTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150093 True 1254 lncRNA 0.39 1 8887122 8888375

Neighbor

gene id symbol gene type direction distance location
CI01000026_08474877_08483134 NA coding upstream 403854 8474877 ~ 8483268 (+)
CI01000026_08454661_08461606 NA coding upstream 425201 8454661 ~ 8461921 (+)
CI01000026_08447474_08449558 TPPP3 coding upstream 436511 8447396 ~ 8450611 (+)
CI01000026_08421799_08434134 ZDHHC1 coding upstream 452929 8421683 ~ 8434193 (+)
CI01000026_08313929_08318869 ATP6V0D1, ATP6V0D1.L coding upstream 568231 8311795 ~ 8318891 (+)
CI01000026_08944583_08947981 NA coding downstream 56151 8944526 ~ 8947993 (+)
CI01000026_08950735_08960908 NA coding downstream 62288 8950663 ~ 8961146 (+)
CI01000026_09076625_09079154 IRX3A, IRX3 coding downstream 186841 9075216 ~ 9079338 (+)
CI01000026_09175446_09178464 NA coding downstream 286874 9175249 ~ 9178488 (+)
CI01000026_09339450_09352303 AKTIP coding downstream 451075 9339450 ~ 9353177 (+)
G131960 NA non-coding upstream 22726 8862513 ~ 8864396 (+)
G132014 NA non-coding upstream 37680 8849237 ~ 8849442 (+)
G132009 NA non-coding upstream 51775 8834997 ~ 8835347 (+)
G131989 NA non-coding upstream 78349 8808498 ~ 8808773 (+)
G131987 NA non-coding upstream 79553 8807348 ~ 8807569 (+)
G132041 NA non-coding downstream 52100 8940475 ~ 8941239 (+)
G132043 NA non-coding downstream 54479 8942854 ~ 8943099 (+)
G132219 NA non-coding downstream 80776 8969151 ~ 8969490 (+)
G132275 NA non-coding downstream 123139 9011514 ~ 9058423 (+)
G132289 NA non-coding downstream 170433 9058808 ~ 9059309 (+)
G131077 NA other upstream 380335 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 587708 8297857 ~ 8307629 (+)
G130967 NA other upstream 698049 8188374 ~ 8189073 (+)
G130552 NA other upstream 1790470 7095053 ~ 7096652 (+)
G128757 NA other upstream 2560337 6326196 ~ 6326785 (+)
G132667 NA other downstream 680364 9568739 ~ 9569160 (+)
G133192 NA other downstream 1271444 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 2182393 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 2356558 11241496 ~ 11246204 (+)
G133542 NA other downstream 2587742 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location