G132800


Basic Information

Item Value
gene id G132800
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 9919386 ~ 9920088 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU151024
ACTAAGTGTTAAGTCAACTGTTTTTTAATAATTAACTGTAATCAGACTGTGAATGTAGCATTTAATAATCACTTAAACGTGCTGTTTGGGAGAAAAAAAGTTGCTACATAATCAGAATAAGTACAACTACAAAGTAGCTTAAAGAAGTGCGAGACCAGGAGAGAGAGGGAAGAGATGAGATCTAATGAAGGGCTGGAGATGAACAGATTGCCTGGCAAGGAAGGGCAGTCTCACAGTGCGGATGTGACTGCCGTATCGACATATGCACAGAATCTGAAATCTGAATTTTAAATTCTGGAGAGCTGCTCACACTCTTTAGTGTCAAAGAAATGCCATCCTGTACAGCTGTCACATGACACCTCAGACCTCACACACACTCACACCATTAGCACACATACATACACAGCACATACCTAGCTTGTGCATCCACACACACACACACACAGCCGTGAAGGAACTAGTAAACACCAGTCTTGCCAAATCGCAACATCTTAGACACACATGCTGCCCAAAATTCGAGAATGAACAAGAAAAAATGTAAGAAAATCTAAACTAAAACTAAAACATAACAAATTACTCATAGGCAGCTAATTGTTTTAGAAATGTATCACCTTCTGCTATTTACAGATTTTTTTTTTTTTTCTGATTTCAGTATTAGCGTAGCGCAGAAACCATCTTTTTGTTTGCTAATTTTCTGTAGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU151024 True 703 lncRNA 0.38 1 9919386 9920088

Neighbor

gene id symbol gene type direction distance location
CI01000026_09915483_09917692 NA coding upstream 1467 9915445 ~ 9917919 (+)
CI01000026_09900193_09906874 SALL1A, SALL1 coding upstream 12149 9900193 ~ 9907237 (+)
CI01000026_09666763_09669325 NA coding upstream 249684 9666680 ~ 9669702 (+)
CI01000026_09602263_09635635 TOX3 coding upstream 282392 9601643 ~ 9636994 (+)
CI01000026_09365911_09428712 CHD9 coding upstream 490310 9364907 ~ 9429076 (+)
CI01000026_10124232_10124468 NA coding downstream 203828 10123916 ~ 10125835 (+)
CI01000026_10136110_10149386 BRD7 coding downstream 215908 10135996 ~ 10149466 (+)
CI01000026_10200749_10202405 NA coding downstream 278505 10198593 ~ 10202514 (+)
CI01000026_10265012_10268157 NA coding downstream 344857 10264945 ~ 10268548 (+)
CI01000026_10315650_10317985 NA coding downstream 394991 10315079 ~ 10317990 (+)
G132916 NA non-coding upstream 69683 9849234 ~ 9849703 (+)
G132908 NA non-coding upstream 80122 9839015 ~ 9839264 (+)
G132888 NA non-coding upstream 101421 9817686 ~ 9817965 (+)
G132879 NA non-coding upstream 115786 9803342 ~ 9803600 (+)
G132868 NA non-coding upstream 131308 9787856 ~ 9788078 (+)
G132953 NA non-coding downstream 10397 9930485 ~ 9930713 (+)
G132951 NA non-coding downstream 58385 9978473 ~ 9979099 (+)
G132950 NA non-coding downstream 62939 9983027 ~ 9983920 (+)
G132949 NA non-coding downstream 68051 9988139 ~ 9988663 (+)
G132974 NA non-coding downstream 101988 10022076 ~ 10022277 (+)
G132667 NA other upstream 350226 9568739 ~ 9569160 (+)
G131077 NA other upstream 1412599 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 1619972 8297857 ~ 8307629 (+)
G130967 NA other upstream 1730313 8188374 ~ 8189073 (+)
G130552 NA other upstream 2822734 7095053 ~ 7096652 (+)
G133192 NA other downstream 239731 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 1150680 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 1324845 11241496 ~ 11246204 (+)
G133542 NA other downstream 1556029 11476117 ~ 11477544 (+)

Expression


Co-expression Network