G132951


Basic Information

Item Value
gene id G132951
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 9978473 ~ 9979099 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU151180
TGAAAAACGAGTGTGAAATTTCACACAATTCTGAAAACGACTGCTGTTCTTCCAGGTGGAGAGAGAGAAGCCAGGTGTTTGTGAAAACCTCATAGAACTAATCTCTCTCTATCTTTTTCCTCTCTCTTTTTTTTCCCCATCGGTGTGCGCTAGCTTTGTAAAGGATCAGGAGGATTTGTAACAGCTGGCATTCTTCCAGTCACTTGAAACAAAGAGAGAGAGGGGAGGAAAACAGTGAAGTGATGGAGAGAACGGCAGACGCTTGCATTCTGCAAACTTTGATAGTAGTTATTATCTGCAGGCACTCTTAGTGAAATAAAGGGGTGAAGTGCTGTGAACTAGTTGAGCTGTCTAAACATCTCTCCTTCTTTGTTTCTATTGCATTAACAGTGTCGGCATCCTCTCTCTGCTTGGGTTCTTGTCTGCTCATGAACAAATATGAAACACCCTTCCTTCCTGATCAATACTTTTCATTCTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTCCATCTTTCCTTTCTTTCTTTCTTCTCTGTCCAAACTTCCTTTTTTCTGTCTATGCTTCTTTCTTTCCTTCCTCCCTTCCTCTTTCCCATGGTTCTTTCTTTCTTTCTTTCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151180 True 627 lncRNA 0.41 1 9978473 9979099

Neighbor

gene id symbol gene type direction distance location
CI01000026_09915483_09917692 NA coding upstream 60554 9915445 ~ 9917919 (+)
CI01000026_09900193_09906874 SALL1A, SALL1 coding upstream 71236 9900193 ~ 9907237 (+)
CI01000026_09666763_09669325 NA coding upstream 308771 9666680 ~ 9669702 (+)
CI01000026_09602263_09635635 TOX3 coding upstream 341479 9601643 ~ 9636994 (+)
CI01000026_09365911_09428712 CHD9 coding upstream 549397 9364907 ~ 9429076 (+)
CI01000026_10124232_10124468 NA coding downstream 144817 10123916 ~ 10125835 (+)
CI01000026_10136110_10149386 BRD7 coding downstream 156897 10135996 ~ 10149466 (+)
CI01000026_10200749_10202405 NA coding downstream 219494 10198593 ~ 10202514 (+)
CI01000026_10265012_10268157 NA coding downstream 285846 10264945 ~ 10268548 (+)
CI01000026_10315650_10317985 NA coding downstream 335980 10315079 ~ 10317990 (+)
G132953 NA non-coding upstream 47760 9930485 ~ 9930713 (+)
G132800 NA non-coding upstream 58385 9919386 ~ 9920088 (+)
G132916 NA non-coding upstream 128770 9849234 ~ 9849703 (+)
G132908 NA non-coding upstream 139209 9839015 ~ 9839264 (+)
G132888 NA non-coding upstream 160508 9817686 ~ 9817965 (+)
G132950 NA non-coding downstream 3928 9983027 ~ 9983920 (+)
G132949 NA non-coding downstream 9040 9988139 ~ 9988663 (+)
G132974 NA non-coding downstream 42977 10022076 ~ 10022277 (+)
G132977 NA non-coding downstream 51140 10030239 ~ 10030511 (+)
G133153 NA non-coding downstream 89477 10068576 ~ 10068873 (+)
G132667 NA other upstream 409313 9568739 ~ 9569160 (+)
G131077 NA other upstream 1471686 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 1679059 8297857 ~ 8307629 (+)
G130967 NA other upstream 1789400 8188374 ~ 8189073 (+)
G130552 NA other upstream 2881821 7095053 ~ 7096652 (+)
G133192 NA other downstream 180720 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 1091669 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 1265834 11241496 ~ 11246204 (+)
G133542 NA other downstream 1497018 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G54971 NA non-coding NC_056705.1 CM032074.1 21456714 ~ 21456970 (-)