G132949


Basic Information

Item Value
gene id G132949
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 9988139 ~ 9988663 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU151178
AGTTTTCCAGAAACTTTAAATACCTTTAGAGTGAAGGCCGATCATCTTAATGTTTTGTCCTGTTGTGGAACATTTCCTCAATTGTATTTTGTGCTTAATTTTCTCGCAATTTTTCATACACTGTACTGCACCAGAAGTTGTGGTGGCCACTAGGCTAAATGCAAAAGCATTGTGCCATTGCTCATTAAGAAAAGCAAAATACACTACAGTCACCAGCTCAACCCAAGCATAAGCGTCACTTTTCAGCATTATGGTAACCGCAAAAACTTAAGTTTCAAAACATTCACCTTTTTTAACTTGCTCAAAAACACATTAAATAACACTTAACTTCAACATTTACTCTCCCACTCAGTCCCAAGCAAAGCATGCTGGGAACTAGAAATCTAATTCCTCTGGCCATTTCAGTAAACATCTGTTTTACAAATTTAAGTGGATTGCACACAATGACATTAAGTTAAATAAAATGTTGAAAAAGTGTTCCATTAGCTTATTAAGTAAATTGAACAAGCAGCAAAATCATTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151178 True 525 lncRNA 0.35 1 9988139 9988663

Neighbor

gene id symbol gene type direction distance location
CI01000026_09915483_09917692 NA coding upstream 70220 9915445 ~ 9917919 (+)
CI01000026_09900193_09906874 SALL1A, SALL1 coding upstream 80902 9900193 ~ 9907237 (+)
CI01000026_09666763_09669325 NA coding upstream 318437 9666680 ~ 9669702 (+)
CI01000026_09602263_09635635 TOX3 coding upstream 351145 9601643 ~ 9636994 (+)
CI01000026_09365911_09428712 CHD9 coding upstream 559063 9364907 ~ 9429076 (+)
CI01000026_10124232_10124468 NA coding downstream 135253 10123916 ~ 10125835 (+)
CI01000026_10136110_10149386 BRD7 coding downstream 147333 10135996 ~ 10149466 (+)
CI01000026_10200749_10202405 NA coding downstream 209930 10198593 ~ 10202514 (+)
CI01000026_10265012_10268157 NA coding downstream 276282 10264945 ~ 10268548 (+)
CI01000026_10315650_10317985 NA coding downstream 326416 10315079 ~ 10317990 (+)
G132950 NA non-coding upstream 4219 9983027 ~ 9983920 (+)
G132951 NA non-coding upstream 9040 9978473 ~ 9979099 (+)
G132953 NA non-coding upstream 57426 9930485 ~ 9930713 (+)
G132800 NA non-coding upstream 68051 9919386 ~ 9920088 (+)
G132916 NA non-coding upstream 138436 9849234 ~ 9849703 (+)
G132974 NA non-coding downstream 33413 10022076 ~ 10022277 (+)
G132977 NA non-coding downstream 41576 10030239 ~ 10030511 (+)
G133153 NA non-coding downstream 79913 10068576 ~ 10068873 (+)
G133188 NA non-coding downstream 113356 10102019 ~ 10152201 (+)
G133281 NA non-coding downstream 281404 10270067 ~ 10270293 (+)
G132667 NA other upstream 418979 9568739 ~ 9569160 (+)
G131077 NA other upstream 1481352 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 1688725 8297857 ~ 8307629 (+)
G130967 NA other upstream 1799066 8188374 ~ 8189073 (+)
G130552 NA other upstream 2891487 7095053 ~ 7096652 (+)
G133192 NA other downstream 171156 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 1082105 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 1256270 11241496 ~ 11246204 (+)
G133542 NA other downstream 1487454 11476117 ~ 11477544 (+)

Expression


Co-expression Network