XLOC_008471 (si:dkey-40g16.5)


Basic Information

Item Value
gene id XLOC_008471
gene name si:dkey-40g16.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21672281 ~ 21673670 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016956
ATTTTCAGTTCAAATCAATCAGTGGCGGTTGGAGAGTCAGCTGCTCAACGGAACCTCGGCGTCCGGCTTTACCGAAGGCTACTTCATTTCTGGATACAAATGTCACACCGCAGTCTCGAGAACACAAAAGGAGGAACAGAAATGAAAAGGTCTCAAGCCAAAATACGAGAGGTTGAAAATGCACCTTGTTCAGAGACATCTCCAGCAAAAATGAGAAAGAATTTCAGACCAGCTTCTGGAGACATGTCTTATGGGTTTGAAACTGCTTTGGCAGaGGCTAGCCGAGAGGTCAGTCTCCTGTTTTCCAAGTACTTGGAGGTCTTGAGGGAAAGAGCTGCTGTGGATGCTTCACAGCTTGGGGAACTGGAAGGTATTCTTACTGAAGCCAGGAGTTTAGAGGCTAATCTTAAAGAAAAGAAGGAACACCTGAGACGATCTTTGGCTTTGATCTCTGACAAACTACAAGGATAGGTTTTCAGTGGTGTTTTGTTATTTATGTAATGTACACTTTACACACATCAATCCATCAGACATTGTTAAGACATTGATTATACATGTGCATATTATACTTCACAAGTTAATACTTTataaaattagaaaaaatatttaggAATTATATTGAAATAAAGTGTTGTGTTGACATTCACAA
>TCONS_00018774
ATTTTCAGTTCAAATCAATCAGTGGCGGTTGGAGAGTCAGCTGCTCAACGGAACCTCGGCGTCCGGCTTTACCGAAGGCTACTTCATTTCTGGATACAAATGTCACACCGCAGTCTCGAGAACACAAAAGGAGGAACAGAAATGAAAAGGTCTCAAGCCAAAATACGAGAGGTTGAAAATGCACCTTGTTCAGAGACATCTCCAGCAAAAATGAGAAAGAATTTCAGACCAGCTTCTGGAGACATGTCTTATGGGTTTGAAACTGCTTTGGCAGGCAAGCTAGCCGAGAGGTCAGTCTCCTGTTTTCCAAGTACTTGGAGGTCTTGAGGGAAAGAGCTGCTGTGGATGCTTCACAGCTTGGGGAACTGGAAGGTATTCTTACTGAAGCCAGGAGTTTAGAGGCTAATCTTAAAGAAAAGAAGGAACACCTGAGACGATCTTTGGCTTTGATCTCTGACAAACTACAAGGATAGGTTTTCAGTGGTGTTTTGTTATTTATGTAATGTACACTTTACACACATCAATCCATCAGACATTGTTAAGACATTGATTATACATGTGCATATTATACTTCACAAGTTAATACTTTataaaattagaaaaaatatttaggAATTATATTGAAATAAAGTGTTGTGTTGACATTCACAATCTGTAGTGACTTATTAAACAACTGCATGTATCTACAGgt
>TCONS_00016957
ATGTCACACCGCAGTCTCGAGAACACAAAAGGAGGAACAGAAATGAAAAGGTCTCAAGCCAAAATACGAGAGGTTGAAAATGCACCTTGTTCAGAGACATCTCCAGCAAAAATGAGAAAGAATTTCAGACCAGCTTCTGGAGACATGTCTTATGGGTTTGAAACTGCTTTGGCAGaGGCTAGCCGAGAGGTCAGTCTCCTGTTTTCCAAGTACTTGGAGGTCTTGAGGGAAAGAGCTGCTGTGGATGCTTCACAGCTTGGGGAACTGGAAGGTATTCTTACTGAAGCCAGGAGTTTAGAGGCTAATCTTAAAGAAAAGAAGGAACACCTGAGACGATCTTTGGCTTTGATCTCTGACAAACTACAAGGATAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097876

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016956 False 649 mRNA 0.40 5 21672281 21673630
TCONS_00018774 False 691 lncRNA 0.40 5 21672281 21673670
TCONS_00016957 True 372 mRNA 0.45 4 21672700 21673452

Neighbor

gene id symbol gene type direction distance location
XLOC_008470 NA coding upstream 129363 21520410 ~ 21542918 (+)
XLOC_008467 NA coding upstream 176385 21323046 ~ 21495896 (+)
XLOC_008469 dre-let-7a-2 coding upstream 234322 21437876 ~ 21437959 (+)
XLOC_008468 dre-mir-100-1 coding upstream 234553 21437633 ~ 21437728 (+)
XLOC_008466 ubash3bb coding upstream 351643 21276735 ~ 21320638 (+)
XLOC_008472 NA coding downstream 34113 21707783 ~ 21719970 (+)
XLOC_008473 ppp2r1bb coding downstream 71010 21744680 ~ 21772839 (+)
XLOC_008474 NA coding downstream 106928 21780598 ~ 21860417 (+)
XLOC_008475 si:dkey-103g5.3 coding downstream 188625 21862295 ~ 21872824 (+)
XLOC_008476 si:dkey-103g5.4 coding downstream 208749 21882419 ~ 21943563 (+)
XLOC_008463 BX663520.1 misc upstream 419999 21252191 ~ 21252282 (+)
XLOC_008462 NA non-coding upstream 420724 21247526 ~ 21251557 (+)
XLOC_008478 BX572077.3 non-coding downstream 329412 22003082 ~ 22003196 (+)
XLOC_008483 NA non-coding downstream 677695 22351365 ~ 22366522 (+)
XLOC_008485 CR848033.1 non-coding downstream 740454 22414124 ~ 22414253 (+)

Expression


Co-expression Network