XLOC_008473 (ppp2r1bb)


Basic Information

Item Value
gene id XLOC_008473
gene name ppp2r1bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21744680 ~ 21772839 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016963
GCCCTTGAGTCGAGCGGAAATAGGGCAGCGCAGCTTCTTTTCGGCGAACAACATCATCCAGGTCTAAAATGGCAGGAGCAGAAGGAGACGATTCTCTTTATCCCATCGCGGTTCTAATCGACGAACTGAGGAACGAGGATGTTCAGTTGCGGTTGAACAGTATTAAGAAGTTGTCCACTATTGCCCTGGCACTGGGTGTGGAGAGAACACGCACTGAGCTCCTGCCTTTCCTCACTGACACCATATATGACGAGGATGAAGTTCTTCTTGCCTTGGCTGAGCAGCTCGGGAGCTTCACTGTGTTGGTTGGAGGCCCAGAGTTTGTGCACTGTCTCTTGCCTCCCCTGGAGAGTTTGGCCACAGTGGAGGAAACGGTCGTGCGGGACAAGGCCGTTGATTCTCTGCGTAAGATCTCTCAGGAACATTCCCCTGTAGACCTAGAGGTTCATTTTGTACCCCTAGTGAAGCGTTTGGCCAGCGGGGACTGGTTCACCTCCCGAACATCTGCATGTGGGCTGTTTAGCGTCTGTTACCCACGAGTGTCCAGTACTGTTAAAGCGGAGATTCGTCAGCACTTCCGCACTCTTTGCTCTGATGACACTCCTATGGTGCGTCGTGCTGCTGCCTCCAAGCTTGGCGAGTTTGCCAAGGTTTTGGAGCTGGATTATGTTAAGAGTGACATCATTCCTCTCTTTACAGCGCTGGCCTCTGATGAGCAGGACTCTGTGCGTCTGTTGGCGGTAGAGGCTGGCGTCAGCATTGCCACTCTTCTGCCGCAGGAAGACTTGGAGGCTCTGGTCATGCCCACCTTACGTCAGGCCGCTGAGGACAAGTCCTGGAGGGTGCGCTACATGGTGGCAGACAAATTCTCAGAATTGCAAAAAGCAGTTGGCCCAGAGATCACCAAGAACGATCTGGTCCCTGCGTTCCAGAACTTGTTGAAAGATTGCGAGGCAGAGGTCCGAGCCGCTGCTGCCAACAAGGTGAAAGTATTCTGTGAAAATTTGCCTGAAGACAGCAGGGAGACCATCATCATGACTCACATACTGCCATGCGTCAAGGAGCTGGTGTCTGACACAAACCAGCATGTGAAATCTGCTCTGGCTTCTGTCATCATGGGCCTCTCCACCATCCTCGGCAAGGACAACACCGTCGAACATCTGCTGCCTCTTTTCCTGGCCCAGCTGAAGGACGAGTGTCCTGAGGTGCGCCTGAACATCATCTCTAACCTGGACTGTGTGAACGAGGTGATCGGGATCCGGCAGCTCTCTCAGTCTCTGCTTCCAGCTATAGTGGAGCTGGCTGAGGACGCCAAGTGGAGGGTTCGGCTGGCCATCATTGAGTACATGCCTCTGTTAGCTGGCCAACTGGGGGTGGAGTTTTTCGACGAAAAGCTGAATTCCCTGTGTATGGCATGGCTCATTGATCACGTGTATGCCATCCGTGAGGCTGCCACCTGCAACCTCATGAAGCTGGTGGAGAAGTTTGGAGCTGAATGGGCCCAGAATACCATTGTGCCCAAAGTCCTTGGCATGGCCAATGATTCCAACTATCTGCACAGGATGACCACTCTTTTCTGCATCAATGCTCTGTCTGAAGCATGTGGACAGGAAATCACCACCAAGCACATGTTGCCTGTAGTCCTCAAGATGTCCACTGACCAGGTGGCCAACGTTCGCTTCAATGTGGCCAAAAGCTTACAGAAGATTGGACCAGTTCTGGAGAGCAGTGCTTTGCAAGCAGAGGTCAAACCAGTCCTGGAAAAACTTTCTACAGATCAAGATATGGATGTGAAGTACTTCGCTCTGGAGGCCATAAGTGTTCTGGCCTTGGCTTGACTGACCTTCTATCGACATCCAGTGAAAAACTGACAACACAAAACCTGTTGCATTtctatttattgttcattttgaaTGATTAAAAATCGTCTGTGTGTTCTTGTTTACTCTCCATGATATTGAATGATCAAAGGTTGGACTTTGGGTCAAGTTTTGCTTCTCAAAACACAGCTCAGCTCTGCATGCTTGTACAGTATAGCTCTTCTTAAACATTACCCCATGAGCCATTCCAGTGCGATCGTATCATAATCGGTACATGCCTGCTTCAGCATGCCATTTGCTTTTCTTAGACCAGAGCTCATCCTGCCAGTAGCAGATGGTGTGAAATGCCTGTTTATTTGCTTTAGTAGATTTGCTAGCATACAGCACATTGTTTACATGTGTTCCCTCTctagagaggggaaaaaaactctTGTGCTCACATGGTTAAACCGCAGAATCCGGCGTGCGCACAGGGTAGATAGTGTTCTGAGCACATAGTTAGATTGGGGTCTCTTGAAATGTGCTTTATGCGGTGAAATCACCCCTTTTATCATAAGATTTTGCCATTTATGACGTATAATTGAATCTGTTGTGCTCGAACACATTAACATTACATAATTCATGCAGCTTTGTCTGCAATTTTGGTTCGTAATAGCTCAATTTATAGACCTTTGTGCCAATAAAATATCTAGTTTTTAACTTTTTCAAGTCAAAGGCatgttaaagggatggttcacacaaaaatgaaattgtCATCATTCACTTGCTCTAAATCTCCTTAAGTTCCTTCtcctgaagatattttgaagaatgtaagaAAGCAGCagtcattgactttcattgaacCACTTAAAGGTGAGTAAAGATTTTTGGGTGCACCATCCCTTTTAATGTGTCAGCAAATGACTAGGTTGGCATGGAGTAAAGTGTTTTTGGGAGGTAATAGACTTAATAAACAGAATTCATTGTTACAAACGACTTGCACCTACTCCATTCTGAGGAAAGCCTTTGTTCATGCTCAATGTCGTGAGGGCTTGCGTTTTTCTTTTTCGACTCATGAGAAATTGGTGTACTTTGGGGACTGAATAAAGTCATTTGAACTATGTA
>TCONS_00016964
CTCCtctttctgacacacacacataggcacatCTGCAAGAGGCTCATTTGGTGTGTGTTTTATAATCCCCATTTAAAGCTTGACCTACTTCAGTGTATGCCATCCGTGAGGCTGCCACCTGCAACCTCATGAAGCTGGTGGAGAAGTTTGGAGCTGAATGGGCCCAGAATACCATTGTGCCCAAAGTCCTTGGCATGGCCAATGATTCCAACTATCTGCACAGGATGACCACTCTTTTCTGCATCAATGCTCTGTCTGAAGCATGTGGACAGGAAATCACCACCAAGCACATGTTGCCTGTAGTCCTCAAGATGTCCACTGACCAGGTGGCCAACGTTCGCTTCAATGTGGCCAAAAGCTTACAGAAGATTGGACCAGTTCTGGAGAGCAGGTACTT

Function

symbol description
ppp2r1bb Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 36. Orthologous to several human genes including PPP2R1B (protein phosphatase 2 scaffold subunit Abeta).

GO:

id name namespace
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0008287 protein serine/threonine phosphatase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040927-20 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 36. Orthologous to several human genes including PPP2R1B (protein phosphatase 2 scaffold subunit Abeta).

Ensembl:

ensembl_id ENSDARG00000032430

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016963 False 2927 mRNA 0.47 15 21744680 21772839
TCONS_00016964 True 397 processed_transcript 0.49 3 21767524 21770009

Neighbor

gene id symbol gene type direction distance location
XLOC_008472 NA coding upstream 24710 21707783 ~ 21719970 (+)
XLOC_008471 si:dkey-40g16.5 coding upstream 71010 21672281 ~ 21673670 (+)
XLOC_008470 NA coding upstream 201762 21520410 ~ 21542918 (+)
XLOC_008467 NA coding upstream 248784 21323046 ~ 21495896 (+)
XLOC_008474 NA coding downstream 7759 21780598 ~ 21860417 (+)
XLOC_008475 si:dkey-103g5.3 coding downstream 89456 21862295 ~ 21872824 (+)
XLOC_008476 si:dkey-103g5.4 coding downstream 109580 21882419 ~ 21943563 (+)
XLOC_008477 ttc12 coding downstream 174278 21947117 ~ 21981546 (+)
XLOC_008478 BX572077.3 coding downstream 230243 22003082 ~ 22003196 (+)
XLOC_008463 BX663520.1 misc upstream 492398 21252191 ~ 21252282 (+)
XLOC_008469 dre-let-7a-2 non-coding upstream 306721 21437876 ~ 21437959 (+)
XLOC_008468 dre-mir-100-1 non-coding upstream 306952 21437633 ~ 21437728 (+)
XLOC_008483 NA non-coding downstream 578526 22351365 ~ 22366522 (+)
XLOC_008485 CR848033.1 non-coding downstream 641285 22414124 ~ 22414253 (+)
XLOC_008488 NA non-coding downstream 768505 22541344 ~ 22561137 (+)

Expression


Co-expression Network