Item | Value |
---|---|
gene id | XLOC_008474 |
gene name | NA |
gene type | non-coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007126.7 |
NCBI id | CM002899.2 |
chromosome length | 48040578 |
location | 21780598 ~ 21860417 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
id | name | namespace |
---|---|---|
GO:0000291 | nuclear-transcribed mRNA catabolic process, exonucleolytic | biological_process |
GO:0034427 | nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | biological_process |
GO:0016075 | rRNA catabolic process | biological_process |
GO:0071025 | RNA surveillance | biological_process |
GO:0071027 | nuclear RNA surveillance | biological_process |
GO:0016078 | tRNA catabolic process | biological_process |
GO:0071028 | nuclear mRNA surveillance | biological_process |
GO:0071029 | nuclear ncRNA surveillance | biological_process |
GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | biological_process |
GO:0071038 | nuclear polyadenylation-dependent tRNA catabolic process | biological_process |
GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | biological_process |
GO:0071046 | nuclear polyadenylation-dependent ncRNA catabolic process | biological_process |
GO:0071047 | polyadenylation-dependent mRNA catabolic process | biological_process |
GO:0034472 | snRNA 3'-end processing | biological_process |
GO:0034473 | U1 snRNA 3'-end processing | biological_process |
GO:0034475 | U4 snRNA 3'-end processing | biological_process |
GO:0034476 | U5 snRNA 3'-end processing | biological_process |
GO:0043633 | polyadenylation-dependent RNA catabolic process | biological_process |
GO:0043634 | polyadenylation-dependent ncRNA catabolic process | biological_process |
GO:0043928 | exonucleolytic catabolism of deadenylated mRNA | biological_process |
GO:0000459 | exonucleolytic trimming involved in rRNA processing | biological_process |
GO:0000460 | maturation of 5.8S rRNA | biological_process |
GO:0000466 | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
GO:0031125 | rRNA 3'-end processing | biological_process |
GO:0090503 | RNA phosphodiester bond hydrolysis, exonucleolytic | biological_process |
GO:1905354 | exoribonuclease complex | cellular_component |
GO:0000176 | nuclear exosome (RNase complex) | cellular_component |
GO:0000177 | cytoplasmic exosome (RNase complex) | cellular_component |
GO:0000178 | exosome (RNase complex) | cellular_component |
GO:1902494 | catalytic complex | cellular_component |
ensembl_id | ENSDARG00000096853 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00018945 | False | 2956 | lncRNA | 0.41 | 4 | 21780598 | 21860417 |
TCONS_00018946 | False | 1571 | lncRNA | 0.43 | 4 | 21780657 | 21846956 |
TCONS_00018947 | False | 618 | lncRNA | 0.46 | 2 | 21780700 | 21830017 |
TCONS_00016965 | False | 842 | lncRNA | 0.43 | 2 | 21780715 | 21821632 |
TCONS_00018948 | False | 2742 | lncRNA | 0.41 | 4 | 21780855 | 21860417 |
TCONS_00016966 | True | 1110 | lncRNA | 0.40 | 2 | 21781001 | 21843306 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_008473 | ppp2r1bb | coding | upstream | 7759 | 21744680 ~ 21772839 (+) |
XLOC_008472 | NA | coding | upstream | 60628 | 21707783 ~ 21719970 (+) |
XLOC_008471 | si:dkey-40g16.5 | coding | upstream | 106928 | 21672281 ~ 21673670 (+) |
XLOC_008470 | NA | coding | upstream | 237680 | 21520410 ~ 21542918 (+) |
XLOC_008469 | dre-let-7a-2 | coding | upstream | 342639 | 21437876 ~ 21437959 (+) |
XLOC_008475 | si:dkey-103g5.3 | coding | downstream | 1878 | 21862295 ~ 21872824 (+) |
XLOC_008476 | si:dkey-103g5.4 | coding | downstream | 22002 | 21882419 ~ 21943563 (+) |
XLOC_008477 | ttc12 | coding | downstream | 86700 | 21947117 ~ 21981546 (+) |
XLOC_008478 | BX572077.3 | coding | downstream | 142665 | 22003082 ~ 22003196 (+) |
XLOC_008479 | ankk1 | coding | downstream | 153612 | 22014029 ~ 22024954 (+) |
XLOC_008463 | BX663520.1 | misc | upstream | 528316 | 21252191 ~ 21252282 (+) |
XLOC_008467 | NA | non-coding | upstream | 284702 | 21323046 ~ 21495896 (+) |
XLOC_008483 | NA | non-coding | downstream | 490948 | 22351365 ~ 22366522 (+) |
XLOC_008485 | CR848033.1 | non-coding | downstream | 553707 | 22414124 ~ 22414253 (+) |
XLOC_008488 | NA | non-coding | downstream | 680927 | 22541344 ~ 22561137 (+) |
XLOC_008490 | NA | non-coding | downstream | 1346742 | 23207159 ~ 23207464 (+) |
XLOC_008468 | dre-mir-100-1 | non-coding | upstream | 342870 | 21437633 ~ 21437728 (+) |