XLOC_008475 (si:dkey-103g5.3)


Basic Information

Item Value
gene id XLOC_008475
gene name si:dkey-103g5.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21862295 ~ 21872824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016967
ttgaCAAAAaagattttgactgcattttcTTGCCTAAAACCAATTAGAACTcccattaacatttatttaaccttACAGGATATTCAGTCATAGTGTTTGCCTCTACAGCAGGAAGATGCTGTTTTTATGCTTGTGTTTGCTGGCTGTGGTCCTGCAGTCTGTTCATTCCTATAACTGCACCTCAGACAATAACAGGGTTCCAGATAACAGTGATTTGGTGGTTCACTGTGGCACCAATATGATCACTCTAGAGGTGAACCTGTGCACTGCGGAATGGGCAGGCTTTAATGCCAGTGGTCTGGCACTGAACGGGCAACGTGATAACAGCCTGTGCTTGGGTACCCCCGACAACACTGTGAACCCTCCTGTCATCCGCTACCAGCTGCCCGTCAATGACAGCCTGCAGAACCCCTGCAGACACTCTCTGCAGATTGTGGATGAGGTTCCCAACCAGTCTGGTCCATTCAGCATGTTCTCCAGCATTCAGTCAGTCATTGTCACAGGATACATTGATACACCCAGCTCCGCAGTAGGAGTTGTCAGCTACGCCACAGACCTATACTACCACTTTTCCTGCCGTTACCCACTGGAATACCTCCTCAACAACACTGAGATCACAGCGTCATCAGTGTCTGTGGCCACTAGTGACAACAACGGCACATTCATTGATACACTCAGCATGAGAGTCTTCAATAGCTCAGATTATAATAGTCCTTTGGTGGTTCCACCGTCTGGATTACCTCTACGCACTAAAGTGTACGTTGAAGTAAAAGCTGCCAATCTCACTGGAAATTTTAATCTACTGTTGGACTACTGTTTTGCAACCCCGTCACCTTATAATACCAGCAACAACGTGCAGTACAACTTTTTTATTGGATGCACTATAGAGAACCGAACAACAGTGATTAATAATGGACTTTCCAAGAGTTCCAGATTTTCATTTGAAGCCTTCCGCTTTGTGGAGCATCGTAATCAGCAGCAGTCTACCATTTACCTGCACTGTATATTGCGTCTTTGCGAGCCAAAGAAATGCAATGAACTGATTAATGCTTGCAACTCTACTGGAGCACGAAGAAAAAGGGCTGCAGTGCCTTACGGAGCAAAAGCCACAGAATCTGCTATGGTGTCTGTGGGCCCTCTGTACACTGAAGCCCTGGGTGAGCCatctacatacagtacacacaacaAACCAgctctcagctttttttttactgCGCTTGACCCTGGGTTATCTTCATTCTGAAGCCTACTTTTAAACGGTGCATGCTTGTCATTTTGGGAGAAGGTACTTTCTGCAGAACCAATGGATGGAGATTGACTTTAAAGTTATCAAATTCCACAAAAGTTACTTTTTTAAGCACATTGTTACAGTTGATGtaagttaaagggttagttcaccataaaaaaaaataaatacactcacAAAAATGGACTCTTcacataaaaaatcttaaattgacTCTTCTAGAAAAATCTAatttaactcttatttttatatgCGCTTTTATATACGCTCTCCACTCAACAAAGAGACATAAAAACTTTACCCAAGACTGGAAAATTGTGTATTGTGCTTTTGTAGCAAAATGTTTGTCTTGCTTTCTAAACAGAAATAGATTGTGCTTTCTTATTTATGAATGTCCTGGTTTTTCTAACACCAAATTCTTCAATGTATTAATC
>TCONS_00016968
GATATTCAGTCATAGTGTTTGCCTCTACAGCAGGAAGATGCTGTTTTTATGCTTGTGTTTGCTGGCTGTGGTCCTGCAGTCTGTTCATTCCTATAACTGCACCTCAGACAATAACAGGGTTCCAGATAACAGTGATTTGGTGGTTCACTGTGGCACCAATATGATCACTCTAGAGGTGAACCTGTGCACTGCGGAATGGGCAGGCTTTAATGCCAGTGGTCTGGCACTGAACGGGCAACGTGATAACAGCCTGTGCTTGGGTACCCCCGACAACACTGTGAACCCTCCTGTCATCCGCTACCAGCTGCCCGTCAATGACAGCCTGCAGAACCCCTGCAGACACTCTCTGCAGATTGTGGATGAGGTTCCCAACCAGTCTGGTCCATTCAGCATGTTCTCCAGCATTCAGTCAGTCATTGTCACAGGATACATTGATACACCCAGCTCCGCAGTAGGAGTTGTCAGCTACGCCACAGACCTATACTACCACTTTTCCTGCCGTTACCCACTGGAATACCTCCTCAACAACACTGAGATCACAGCGTCATCAGTGTCTGTGGCCACTAGTGACAACAACGGCACATTCATTGATACACTCAGCATGAGAGTCTTCAATAGCTCAGATTATAATAGTCCTTTGGTGGTTCCACCGTCTGGATTACCTCTACGCACTAAAGTGTACGTTGAAGTAAAAGCTGCCAATCTCACTGGAAATTTTAATCTACTGTTGGACTACTGTTTTGCAACCCCGTCACCTTATAATACCAGCAACAACGTGCAGTACAACTTTTTTATTGGATGCACTATAGAGAACCGAACAACAGTGATTAATAATGGACTTTCCAAGAGTTCCAGATTTTCATTTGAAGCCTTCCGCTTTGTGGAGCATCGTAATCAGCAGCAGTCTACCATTTACCTGCACTGTATATTGCGTCTTTGCGAGCCAAAGAAATGCAATGAACTGATTAATGCTTGCAACTCTACTGGAGCACGAAGAAAAAGGGCTGCAGTGCCTTACGGAGCAAAAGCCACAGAATCTGCTATGGTGTCTGTGGGCCCTCTGTACACTGAAGCCCTGGTTAAAGATCTTCCCACTGCATCGCCTTATGGAGGCAATGAGCCGCAAAACCGGGAAAATATGAATGTGGCTGGAGTAATGGCAGGGGTCATTTTCGCCACCGCCGGTACTGTGGGTCTGATCATGGCTGGATGGTTTGTGCTGAAGAAGTTTGTCTGGGCTGGTGGCCTGCCTCGAGCTTTCCACTAA

Function

symbol description
si:dkey-103g5.3 Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000062319

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016967 False 1680 mRNA 0.42 8 21862295 21871471
TCONS_00016968 True 1267 mRNA 0.48 10 21862373 21872824

Neighbor

gene id symbol gene type direction distance location
XLOC_008474 NA coding upstream 1878 21780598 ~ 21860417 (+)
XLOC_008473 ppp2r1bb coding upstream 89456 21744680 ~ 21772839 (+)
XLOC_008472 NA coding upstream 142325 21707783 ~ 21719970 (+)
XLOC_008471 si:dkey-40g16.5 coding upstream 188625 21672281 ~ 21673670 (+)
XLOC_008470 NA coding upstream 319377 21520410 ~ 21542918 (+)
XLOC_008476 si:dkey-103g5.4 coding downstream 9595 21882419 ~ 21943563 (+)
XLOC_008477 ttc12 coding downstream 74293 21947117 ~ 21981546 (+)
XLOC_008478 BX572077.3 coding downstream 130258 22003082 ~ 22003196 (+)
XLOC_008479 ankk1 coding downstream 141205 22014029 ~ 22024954 (+)
XLOC_008480 spa17 coding downstream 395023 22267847 ~ 22286918 (+)
XLOC_008463 BX663520.1 misc upstream 610013 21252191 ~ 21252282 (+)
XLOC_008467 NA non-coding upstream 366399 21323046 ~ 21495896 (+)
XLOC_008483 NA non-coding downstream 478541 22351365 ~ 22366522 (+)
XLOC_008485 CR848033.1 non-coding downstream 541300 22414124 ~ 22414253 (+)
XLOC_008488 NA non-coding downstream 668520 22541344 ~ 22561137 (+)
XLOC_008490 NA non-coding downstream 1334335 23207159 ~ 23207464 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04207000_04210775 NA coding CI01000072 null 4206961 ~ 4211078 (-)