XLOC_008476 (si:dkey-103g5.4)


Basic Information

Item Value
gene id XLOC_008476
gene name si:dkey-103g5.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21882419 ~ 21943563 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016969
TGGCCTTCTCGCCTACTGGATCCATCAAAGGAATGAAGCCAAATGATGTGAAAAACAAGACTGTTCATGAATCATTTAGGATGGCAGGGAAAGGGCTTCCTGTATGCCTTCGAAAGTCTCTGAGCCCTGGACAGCAGACCAAGATGATGTGCCTCTGCTGGCCTTCCCTGCTTTACTGGTTCTTCACCTCCACACTGAACACGGTCATTGGATCAAATATAACTCTAAGACTTTCTGAAGGATCTTCCTGCAGACCAGGATTTTACTGCCTGGAAGGAGGTGAGGGTCCTATTCCCTGCCCCAGAGGAACATTTGGACCAAGTTCCTGGGCCACGACCATAAACAGCTGTATCAGCTGTCCACCACACCACTATGGGCCTAGAGAAGGCTTGAGCAATTGCCTGCCCTGTGGGCCTTGGTCACATCAGCCTCAGCCAGGACAGGACAGCTGTACATGTCTGCAAGAAGGTCAAGTCTTCCAGGCCAGTGATGGGCAGTGTGCCTGTATGTTGGGATATACACTGAAAGGAGAAGCTTGTGCGCTGAACGTCTACGAGATCTGCAAAGACGGAAGAGCACGTAACCAGCATGGAGACTGTCTAGACCACAAACAATGGAAGCAGTATTGCTCACAGCAGGTGTGTTCATCTCCTGACCTGTACGAGGGTTATGATGTCTCTCTGGGTCTGTGTATGTGCAGAGGTTTGCCCAGGTCTGAGCCGGACAGAGCTGAATGTGCAGGCTGGTGCCGGAGCCTCCTTACTCCGGTTCTACAACTTGTTTGCACTGGAAGCCTTTACTTGCTCTACACTGAGGCTAATCAACAGGTGAGCGTGTCAGAAAGCATGCTGGAGAGCGTCCTTAAACACTGGGACTCCCGAGGGAGCTTTGAATGCAGTGCGCAGATCAACTTCTCCAGGCCGGTGTACACAGTTCAAACAGGCGAGCGTCACACCTGCTACTTCCACAGAGACAGCTTGTACAACACTAATGCTGCGTTCGACTGGGGAGCCTTCAGATTACTTCATCATGATCAGCTACTGGACAGATCTGCCCACTCTCTGTTCTCCATCAGCCTCCATGAGCCCGGCGTTTACACCTTCAAACTCAGCAGCCAGAAGCACAGACACATGtaTGTTAGGGTGGTTCCTGCAGGTGGAGAGTGTTACGACACTGGGCCTTTCTTTCCTTCTGACACACACCATTTGACCCGCATGGGCATCGCTCTGAGGCGCCAGCTGCTGCTCCGTCCCGATTGGCTGACGATTGGTGGGCTTTTAGCAGGAGCTGTTCTTGTCCTCTGTCTGTGCGTCATCATATTGGCAAGTGATAATGGAGGTTTAACAAAAACCTTAGGCTTGACAAAGCTTGGCTCGTTGAAGTGGCTGAACATTGTGTGCTTACAGGTCCTGTTCAGGGAGTATGGCTGGCCTGAGAAAGTGCCAGCCCAGGCCAGGTACCGTCATCTTCAGCTCCGGTATAACATGGATGACTATTCGTCCAAGGGCTCCAGGGTGGTGGCGGTGAAAAAGGCACACCGAAATCTGCAGGTGGGGCTGACGGAGGATTCAGGGCAGAGAGCAGTGGCTCTGGTATCGAGTGAATTCTGGGACTATGAAGAGCAAGTGGATCTGGAAGCCTTCAGTTCCAGCACCTTCTATGAAATCCTGCTCAAGCACAGCGTGTCGGTCACCGTTCGCCTTGGACAGCTCAAAGGAGAGGTGAAGCAACTCTACCAGGGGCTGCAGGGGAAGCTGAAGGAGCTCCACCCTGGCTGGAGGATGTTTGGAGGGAAAGGCGAAGGTTTGGAGAGGCAAGTAGAGCAGGAGATGGTGCGGCGCAGAGCGATGGCCAATCAGATGATTCAGCTGCTGGACAGTCAGATGCAGATCCTGCTGGTGGAGATGAAGGCCAAGCAGGCCATGCAGAGGGGCTTCAGAGCGCGGATGAGGGAGAGCTTGAGGCTTCTCAGACTGGCGGCCGAGGGTCAGGCCTCGCTCTGGGACAAATACATCAAACAACATGTTGTGGAGCGAGTGTCTCTTCTGGCTGATGAGATGACTGAGATGGTATCAGTGGAGAGCCAGAGGGCAGGCGCCAGCTCTGTGCTCAAAGAGGGCACTGGAGCACAGCTATTATGCCCTGCTACTGGAGCCGTCCTCAGCAGGGAAGACGTCATCGCCCCTGATGGATCTGTTAGAACTTGCGACGCTGTTCATGTAGATCCCCTCACAGGCCTCATTCAACCCAACTCTAATGCTCATATGTTACTGGCTAGTGGTCACAGCATGCCCGTGCCCCCGGACTTCTTTCTGCACCCCCAGACTGGCAAACTACTGCCTGTGGCTGGAAACGTGGACTTTGATCCTGCTTCTTCCACCCTTGTCTTTACAGCCGATGCTGGTGTTGGTGAGATGGGAAAATGGGAATCACCCCTGCTGCCTTTCATCCCGTACCCTTCATCCCGTTACACTGAAATCCTGGCTGCTTCCAAACTACGGGGGCTTCGTTCAGGCCAGAGGCTGGTGCTTGGTGGACCCATGTGCGACTACGACACTGGCGTTTTGGTGCCTATTCTTGCAGTCACTATCCATCCTCAAACAGGACTGGTTTATCCTTTGGGTGGAGTGTACACATGTCCCATCTCACGTCTGCGGCAGCCCATTCAGATTGGCTCTCCAATGCTGGACCCGCGCACAGGAAACCTGGTGCTCATCACGGGAATCACTCTCGATCCTCATACTGGGGCTGTGCTTCCAGTCGGAGGGCTCCTCCTGGGCGAGTCCTTCATCGAGCCCTTGAGCGGCCGGATGGTGCGGGTTGGTGGAGGCAGCGTGCGAGGAGGGAAGGTGGTGCCTCATGCTGGGGGTTTCCAGGCTCTGCTGGACAGCCAGGCTCTGGGCATCTGCTTGCGGGTGGCGGAGCTCCTGCGTGGATGCGGCGAGGAGTGGAGCTCAGCAAATGCAGATCCTCAAGGTGACCTGGACAGACTTTCGGCAGCAGCTTCTGAGCTGGAGCAGGCCTGGAGGAGCAGCCAGCACTGTATGCTGCAGATGCTGAGTCGCCTGGAGGCTGTACAAGAACAGGCCAGGGCTGTGCTGGAGGACGGCGGGAGTGTGGGGGAGATCAAGCTTCCTGGCATTGAGCTCTCCTTGCCGGCTCTACCCGGGCTGGAGTATCCTGACCCCGGAGGCTCGGGTTTACGCGTGCCAGTTCTCGGCGCTCAGTTGGACTGGGTGTCAGGCTGCATGGTGCCCTTGGCAGGAACCATGGAGGATGCAGATGGCAAAGTTAACCCAGAGTACATTACAGGCCTGGTTCCCATACGGTTTGGAGTGCAGACGGTGGACCCGGTGACAGGGGTAATCGCTCCGGTTGTAGGGGCCAATCTGGATGTCTGGAAGCGCGTTGTAGTTCCTGTAACCACATCCCAGATTTTGATGCTAGGAGAAAACCCAGACAGTGTCACGGTGGAAACCCTCCAGAAGGAGAGCAACGAACGGAGCAATTACTGGCGCGAGCAGACTCTGAAGGAGGACGAGATGCTGGGGGATTTTGACAGAGCCGTTAAACACTATCTCTCCACATCCGTTCACGAGTCCGACTGTaTGGACTGGACAGACACGGACAGGCAGTTGAGGGAAACGGCTGCTGAGATTCAGGAAAGTGCTCAGTGTGAGGCCCAGAGAAAAGCTCTCCAGAAGTCAGATTTATCTCTGCTTCTACCAGCCCATGTGTTACACGCTCTCACAGGAGGTCAGTCCTTGCGCTCAGACTCTCCCACTGAGAGCGCAAATGCCGGGGCTTTAAAGATTCAAAACAGAGCGTTCGTGATGCTCATGTGCAGTATGGTTCAAAAGTTTGGCAGCAATAGATGTAGAAGTCTCACAGAGGGAGACGAGGAGGAGTGGGAGCAGCAGTGTTTCTGGCACACGGAGCTGAAGACCGTGATGAACCGAGCAAATGTGTCCATGGAGAGACTACGGAGAGAACGGAATCAGCTGTCGGCACAGGATCCGGACTGGAGTTTGAGAGAGCAGGAACTGTGGGAGCAATTATTGCAGAGACAAGCAGAGCTGGACGCTGTGCTCTCATCTCTGCGCTGTGCTCGTCAGGTCTGCCAGCTGCGTGCTGAAACTGCTCAGTCTTTGGTGTCTGGCACTTTCTGGTTTAAGGATTTCGGTGTGCTGCAGCCCAGGGGTGTCAGAAACCCTCTGAAAGTAATAGCCATGACTCAGCAGAAAATCCTTCCTCGGCTCGAACGACTTATTCAGCTGCTGGAAGAAAGCAAAGCACTTGGCCAGTCGACTAGCACGCAGCGACAGCAGAGCTCTAGTGTCTCAACTCAGTCCTTTAAAGATCAAATAAAGGCTTCGTCTGTGAGTGAACAGAATGCCACGGTGCCCTCTCTTCCTCTGTCAAACCCGTCTTACGCTCAGAAAAGCCAGGAGAAAACGCAGCTGAACAGCCAGGATGTCCGATCTCTCCTGGAGCCTGGTGCGTCTGCACATACGAGTATCCCAAAGCTTGCAGGTCAGAGCATTTCAGTGGAGGACTTGTGTAACCCAGTAGGAGGACTGGTCCAGACTGGTAGCGCTGTCTCCTCTCTTCCAGCTGATGAAGGAAGTGGAGCAGCAGCTCAGGGATTGTGCCAGAGACAGAGGCCTGATGAAGATCCAGCCCTCAGCTTCTTCAATGCATTTAATCACAACTTATTTGTTGAAGTTTGCACTAATAAAGAGTGGTCAAACAGAGTGGAAGTGGGATTGTGTTCAGGTTCCAGTCGTCCATTCATGGACTTCATGGATGCGCAGTGGGAGTGTGAAGGAAAGCTGATTCAAATACCAACAGTAACTCTTCAGCTGGCTTCAAGTCTTCCTACCAACGACTACCATAACAATGCATTCCGTAACTCTTTCTATTATCAGGTTTTACAGGTGGGCCTCAGTGAGCTTTTCCATTCCAGACTGGGACAAGCGGACAGTCCTGAACATAATAGAATGAAAGATTTGGCGTCTGATGGAGCTCTCGATGGTCTTCTATTGGAAAGAGTGCAGAAACCAAGTCCTGGGATTTTCTCTGAggatGAGGTTTTGGGCCGTCTCAGCAAGTACAGAGAGGCTTCAGTTTATCGCCGAGTCGAGAGTCTTCTGAAAGAGCCTCCTAAGAGCCTGGAGATCCACCTCAACACTGACCCGTCACTCAACCACGGCACAGACAGCCAAGACGCCGCTCCTCAGTGA

Function

symbol description
si:dkey-103g5.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-503 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000089200

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016969 True 5243 mRNA 0.54 28 21882419 21943563

Neighbor

gene id symbol gene type direction distance location
XLOC_008475 si:dkey-103g5.3 coding upstream 9595 21862295 ~ 21872824 (+)
XLOC_008474 NA coding upstream 22002 21780598 ~ 21860417 (+)
XLOC_008473 ppp2r1bb coding upstream 109580 21744680 ~ 21772839 (+)
XLOC_008472 NA coding upstream 162449 21707783 ~ 21719970 (+)
XLOC_008471 si:dkey-40g16.5 coding upstream 208749 21672281 ~ 21673670 (+)
XLOC_008477 ttc12 coding downstream 3554 21947117 ~ 21981546 (+)
XLOC_008478 BX572077.3 coding downstream 59519 22003082 ~ 22003196 (+)
XLOC_008479 ankk1 coding downstream 70466 22014029 ~ 22024954 (+)
XLOC_008480 spa17 coding downstream 324284 22267847 ~ 22286918 (+)
XLOC_008481 hepacama coding downstream 368240 22311803 ~ 22325973 (+)
XLOC_008463 BX663520.1 misc upstream 630137 21252191 ~ 21252282 (+)
XLOC_008470 NA non-coding upstream 339501 21520410 ~ 21542918 (+)
XLOC_008469 dre-let-7a-2 non-coding upstream 444460 21437876 ~ 21437959 (+)
XLOC_008468 dre-mir-100-1 non-coding upstream 444691 21437633 ~ 21437728 (+)
XLOC_008483 NA non-coding downstream 407802 22351365 ~ 22366522 (+)
XLOC_008485 CR848033.1 non-coding downstream 470561 22414124 ~ 22414253 (+)
XLOC_008488 NA non-coding downstream 597781 22541344 ~ 22561137 (+)
XLOC_008490 NA non-coding downstream 1263596 23207159 ~ 23207464 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04197826_04201434 NA coding CI01000072 null 4197826 ~ 4201434 (-)