XLOC_008477 (ttc12)


Basic Information

Item Value
gene id XLOC_008477
gene name ttc12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21947117 ~ 21981546 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016970
AAACAAACCTGCCTCAGTCACTTCTTTTCGCTGTTTGGCTTTTATGAACTCTGTTTCAACCATGTCTTTGCTGGATAGCGACCTCGAAAAGTTTTTAAGGGATGTTGATCAGATAAATGAGTTAGTCAGAGATTTAAATTCCAGCGAAGCATCGTGCCAGGAGAATGCAATTGTGAAGACAGagcagttgatttcatctttggagCAGAAGGAACAGTTTAAAACCAAAATCAATAAGACGGTTATAAACACCTCATCATCTGAAAATAACCCCCTGaaCATCCGATATGAGTCGAGTCAAAATCCAGAAAATTTCTTAAAGATTTTAGAAAAAGATGCTGAAGACAGATGTCAAAGAAGAAAGATGAAGGAGGAAAGAGCTAATGTGCTAAGGGAGCAAGGGAATGAGGCTTTCACTCAAGGTGACTATGAAACGGCTGTCAGGTTTTACACTGAGGGCTTGGAGCAGTTGCGTGATATGCAGGCTCTCTATACAAACAGAGCTCAGGCCTTTATCAAGTTGAAGAGATATAAGGAGGCCATAAGTGACTGTGAATGGGCTCTGAGGTgcaatgaaaaatgtattaaagcaTTTATACATATGGGGACATCTCACCTAGCACTCAAGGATTTCACACAATCCAGGATTTGCTATCGAAAAATTTTGGAGATAGAGCCACAGCGGGAGACCATGGTCAAAGCTTATCTGAGACGAGTGGATATGGAAGAGAAAGTGACGCTTCAGGAAAAAGCAGCTTGGGAAGAGCTACAGGAGGGAACAGGGCAGGCCACGAATATAGCAGACTTGCTGAAAAAGCTGGAAAGGCCCAATGAGATCAATCTTTACTACTGTGGTGGACTGGAGCTGCTCTCAAAGGCTATTAAAGATTGTTCTGGCCAGACTTTATTCAGATTAAACAATGGCTTCAGTATCATTAACGGCAATATCACTGTAAGAAGCTGCCTCTCACAGAATTCAAAAGACCCAAATGCGGTGGATCTATGCAGGTCCCTCATCAAACTGTGGAGGCAAAACCAGCAGCTGTTGATGGAGTGTTCCAGCGCTAGACAACACATGGTCCAGCTGTTGGCTTCGCCCTTTCATGAAATACACACTGAAAGCCTGCAGTTGCTCAGCATGTTTGCACAAACTCAGCACGGTAGAGAGCTGATCATCCACAACCTGGATTCACAACAAATGGCAGAGAACCTGATGATCTGTGTGTGCCGCAATACAAGCTCCCTGTCACCGCTGACACTCCTGGAGAACTTGGCTTCAGAAAAGAAatTTCAGATTCAGTCGAGGGAGAACTTCACAGCCATTTTTGCGCTTCCTCTTGAAGATCTGCTGTCAAATACCACAACAGCAGACCCCAAGTTGCTAGCTTCTGTGATTTCTGTCATCGGGACCATAGCCCAGGATGATGCCATCAGCAAAAACCTAGCGGGCCGCAAGGAATTTTGGAGATGCTCTCTTCAAGCCATGGAACAGTGCATGGGCTGTGAATGTGGAAATGTCCTTTATCCCCTCCTGGGTTTGATGATCAACTTAGCTTCAAATCCCTCTCAGGTTGTACAGGAGCTTGCTGTTCCGGCCAGCAGCAGGTGCTTGGGCCTGCTGAGCCATTCCTCTGGAGGCGTCATCACAAGAGCTGCTGGTTTGCTGAGTGTTCTCCTCCTGCTGTCTTCTGATGCCACCCGGGAAGCTGTGCAGAATGGTGTAGTGAAGAAGCTGCTGAAGATGCTGAAGGCAGGGGGAGAGATGAGCTCCAGATACTCCATTAAGGCCCTGACAGTTTGCACCGCTTCAATCCCAAAGGCCCGCGAGGAGCTGGTTAAGCTTGACAAACggCTGCACACTCTGAGAAATCTCCTGGCCGTTATTGACGAGTTGGTGGTGGGGAATGCAGCTTTGTGTATGGGCCACTGCTTAGAAGTGGATGGCGCCGCCAGTTGCCTCCTGGGTACAGACTGTGTGGCACTGCTGCTCCGCCACGCCGCTGGAGATGCCAAAAGAGCAGCCGTTCAGCAGAATGCAGCCATCACCCTTGGGAAGCTGTGCAAAATAGAGCCCAGgcaCATGGAGAAGCTCAGGGAGCTCCATGGTTTAGAAATTCTTCACTCCTGTATGAGACTGATCACGTGAGCTACTTCCCAATAAATGACCCCATAACTcaggacacacgcacacacacacacacacgcacacatagatGAATGCTGTTTGGTCCACAGCTTAAGATGCTCATCTTAAGTGAGGCCACAAATTACTGTCATGCCTGAGGCCTATCTTGATTATGCAGCTGTTTCCTGTGTTCATTTTAATTAGAGAGAATTCACATTGACATGTGAGTCTGTTATCTGCTGTTGTAGAGAGCATGTTGCCCCGGGACGATATTCGAAATGTTTCAATTTCCTTTCATCCCAAATGGCTCACTTGGGAAGTGTGTTGCCTTGATTACATTTTGTTCTCTGTTTGTTGATAAATGGATTAATGGTAACTTTCATgtgctgaataataataaaaaagataaatacaacTGCATTTGAAGATAATTACGGTTAAAACCTTCTCTTCTTGGCAGAGTTGATCGCTTTGGAAAGCATTTGATGATGTAAGGAGAAAAAGTAGCTTTGTTACAATAGAAATGGCTTTCGCTGAAATGAGTCAGTTTGTGTAATCCAGGGTTTTGGACAGGATTTAACAAACAGACTGCTGTAAACTGCAAGTTAAACACTTGATAACTCCTATTAAATTTAAAGTCACCTAAAGGCTTACGTACTGCTGTCATTccaaatatgtataattttttgtACACTAAATAgtcaatgtttaaaaaagaagaaaaatgattTTACTATTCTTAAATGCCATTTTTGTATTCTTGTCATGTTTCTTTTATGCTCCACAGATGAAAGAATGCCACAGTTATAGAATAGCATTACAAGTAAATGataagttaattatttttttttggttaactGCTTTCTAAAAATACTTTTTGTCTATTCAACTGCCCAGAGAAAAGTATTCTGCTTGCTACAGTTATCAtacataaacaaattattcagaTGATTTGTTTCGAgtcatttgtcaggtttttgttctTCAAAGACCCTTGTACTGTATGTAGGATTGGTTTCTTATCCTAAACCTCTGTTTCTAGTCccaaaatgtgtttttgtgctaATAAAGAAAGGTTTGAgcctttga
>TCONS_00016971
GAAACTTtagctgaactatcccttcaagaaATTAATTATCTGCTGATAAATTATGGATTATTACTCCTTCTGGCTATGTGGGTTTTAAAAAATAGACTAAATGCAAGAATTTTTTCCTGCatatcattattaaatattatgaattaTCTGCATTGGGCAAATTTCCCAAATCAGTGCATTCCTAATAGTTTCTAACAAATAGTATGATTACTCCAAACTACTTAGAAATGTCAAAAAGTACTTGATAATGTTTCACCACTTTACTCAATTGCTGTAATTTTTTTGAGTGGccttttaacaaataaaactctCATTCACAGTgcaatgaaaaatgtattaaagcaTTTATACATATGGGGACATCTCACCTAGCACTCAAGGATTTCACACAATCCAGGATTTGCTATCGAAAAATTTTGGAGATAGAGCCACAGCGGGAGACCATGGTCAAAGCTTATCTGAGACGAGTGGATATGGAAGAGAAAGTGACGCTTCAGGAAAAAGCAGCTTGGGAAGAGCTACAGGAGGGAACAGGGCAGGCCACGAATATAGCAGACTTGCTGAAAAAGCTGG

Function

symbol description
ttc12 Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 45. Orthologous to human TTC12 (tetratricopeptide repeat domain 12).

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-071016-4 Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 45. Orthologous to human TTC12 (tetratricopeptide repeat domain 12).

Ensembl:

ensembl_id ENSDARG00000056896

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016970 False 3214 mRNA 0.43 21 21947117 21981546
TCONS_00016971 True 573 lncRNA 0.36 3 21950231 21952715

Neighbor

gene id symbol gene type direction distance location
XLOC_008476 si:dkey-103g5.4 coding upstream 3554 21882419 ~ 21943563 (+)
XLOC_008475 si:dkey-103g5.3 coding upstream 74293 21862295 ~ 21872824 (+)
XLOC_008474 NA coding upstream 86700 21780598 ~ 21860417 (+)
XLOC_008473 ppp2r1bb coding upstream 174278 21744680 ~ 21772839 (+)
XLOC_008472 NA coding upstream 227147 21707783 ~ 21719970 (+)
XLOC_008478 BX572077.3 coding downstream 21536 22003082 ~ 22003196 (+)
XLOC_008479 ankk1 coding downstream 32483 22014029 ~ 22024954 (+)
XLOC_008480 spa17 coding downstream 286301 22267847 ~ 22286918 (+)
XLOC_008481 hepacama coding downstream 330257 22311803 ~ 22325973 (+)
XLOC_008482 pde9al coding downstream 352232 22333778 ~ 22348626 (+)
XLOC_008463 BX663520.1 misc upstream 694835 21252191 ~ 21252282 (+)
XLOC_008470 NA non-coding upstream 404199 21520410 ~ 21542918 (+)
XLOC_008469 dre-let-7a-2 non-coding upstream 509158 21437876 ~ 21437959 (+)
XLOC_008468 dre-mir-100-1 non-coding upstream 509389 21437633 ~ 21437728 (+)
XLOC_008483 NA non-coding downstream 369819 22351365 ~ 22366522 (+)
XLOC_008485 CR848033.1 non-coding downstream 432578 22414124 ~ 22414253 (+)
XLOC_008488 NA non-coding downstream 559798 22541344 ~ 22561137 (+)
XLOC_008490 NA non-coding downstream 1225613 23207159 ~ 23207464 (+)

Expression


Co-expression Network