G133914


Basic Information

Item Value
gene id G133914
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10949587 ~ 10949789 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU152288
ATTTCTTTCAAATAAAAAAAAAAAAAATCTTATTGACCCCAAATTTTAAACAATAGTTATCTAACAATCAAAGTGTATTAAGTTAAAAACACTAATAATTTAATATAACTACTGAATGTAATCTTTAGCAAACCTCAAAATGAATATCCAATATCTAGCTTCCGCCAGACCGCCTTCCGTATTAAACTTACAGGAAAAAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU152288 True 203 lncRNA 0.26 1 10949587 10949789

Neighbor

gene id symbol gene type direction distance location
CI01000026_10872568_10886442 NA coding downstream 63145 10872346 ~ 10886442 (-)
CI01000026_10851071_10860344 ATG13 coding downstream 89243 10851071 ~ 10860344 (-)
CI01000026_10793317_10799991 FBXO3 coding downstream 148211 10791792 ~ 10801376 (-)
CI01000026_10788054_10788652 CD59 coding downstream 159878 10787339 ~ 10789709 (-)
CI01000026_10775368_10777914 APLNR2 coding downstream 170619 10775122 ~ 10778968 (-)
CI01000026_11074731_11075204 NA coding upstream 124797 11074586 ~ 11075207 (-)
CI01000026_11081510_11082996 CHRM4, CHRM4A coding upstream 130623 11080412 ~ 11082996 (-)
CI01000026_11123998_11200321 AMBRA1A coding upstream 174209 11123998 ~ 11200321 (-)
CI01000026_11215228_11222347 SNX1B coding upstream 265098 11214887 ~ 11222347 (-)
CI01000026_11226603_11231478 SLC8B1 coding upstream 276814 11226603 ~ 11231478 (-)
G133895 NA non-coding downstream 639 10948698 ~ 10948948 (-)
G133913 NA non-coding downstream 8792 10940563 ~ 10940795 (-)
G133912 NA non-coding downstream 10296 10939083 ~ 10939291 (-)
G133896 NA non-coding downstream 12335 10932986 ~ 10937252 (-)
G133909 NA non-coding downstream 17453 10931935 ~ 10932134 (-)
G133920 NA non-coding upstream 19548 10969337 ~ 10969827 (-)
G133921 NA non-coding upstream 21204 10970993 ~ 10971291 (-)
G133922 NA non-coding upstream 23238 10973027 ~ 10973357 (-)
G133923 NA non-coding upstream 25592 10975381 ~ 10975666 (-)
G133924 NA non-coding upstream 27843 10977632 ~ 10978245 (-)
G133790 NA other downstream 111982 10834015 ~ 10859589 (-)
CI01000026_10347872_10351783 CEBPA other downstream 600630 10347746 ~ 10351783 (-)
G132721 NA other downstream 1398943 9550030 ~ 9550644 (-)
G132575 NA other downstream 1561871 9387151 ~ 9387716 (-)
G133802 NA other upstream 352126 11301915 ~ 11307181 (-)
G136110 NA other upstream 3605128 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 5806940 16756729 ~ 16761341 (-)
G137667 NA other upstream 5856575 16806364 ~ 16808372 (-)
G137914 NA other upstream 6033462 16983251 ~ 16984352 (-)

Expression


Co-expression Network