XLOC_008478 (BX572077.3)



Basic Information


Item Value
gene id XLOC_008478
gene name BX572077.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22003082 ~ 22003196 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00016972
TCAGGCAGCAagctttctgcaactctcacacgtttgcccactgaagctaagcagggctgtgtccagtcagtacctggatgggagaccagtTGGGAAAGCTAGCATGCTGCTGGAC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000115200

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00016972 True 115 rRNA 0.55 1 22003082 22003196

Neighbor


gene id symbol gene type direction distance location
XLOC_008477 ttc12 coding upstream 21536 21947117 ~ 21981546 (+)
XLOC_008476 si:dkey-103g5.4 coding upstream 59519 21882419 ~ 21943563 (+)
XLOC_008475 si:dkey-103g5.3 coding upstream 130258 21862295 ~ 21872824 (+)
XLOC_008474 NA coding upstream 142665 21780598 ~ 21860417 (+)
XLOC_008473 ppp2r1bb coding upstream 230243 21744680 ~ 21772839 (+)
XLOC_008479 ankk1 coding downstream 10833 22014029 ~ 22024954 (+)
XLOC_008480 spa17 coding downstream 264651 22267847 ~ 22286918 (+)
XLOC_008481 hepacama coding downstream 308607 22311803 ~ 22325973 (+)
XLOC_008482 pde9al coding downstream 330582 22333778 ~ 22348626 (+)
XLOC_008483 NA coding downstream 348169 22351365 ~ 22366522 (+)
XLOC_008463 BX663520.1 misc upstream 750800 21252191 ~ 21252282 (+)
XLOC_008472 NA non-coding upstream 283112 21707783 ~ 21719970 (+)
XLOC_008470 NA non-coding upstream 460164 21520410 ~ 21542918 (+)
XLOC_008469 dre-let-7a-2 non-coding upstream 565123 21437876 ~ 21437959 (+)
XLOC_008468 dre-mir-100-1 non-coding upstream 565354 21437633 ~ 21437728 (+)
XLOC_008485 CR848033.1 non-coding downstream 410928 22414124 ~ 22414253 (+)
XLOC_008488 NA non-coding downstream 538148 22541344 ~ 22561137 (+)
XLOC_008490 NA non-coding downstream 1203963 23207159 ~ 23207464 (+)
XLOC_008492 NA non-coding downstream 1263462 23266658 ~ 23268377 (+)
XLOC_008467 NA non-coding upstream 507186 21323046 ~ 21495896 (+)

Expression



Co-expression Network