Gene
RNA
| Item | Value |
|---|---|
| gene id | G133981 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 11237245 ~ 11240455 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU152357 | True | 832 | lncRNA | 0.45 | 7 | 11237245 | 11240455 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_11226603_11231478 | SLC8B1 | coding | downstream | 5767 | 11226603 ~ 11231478 (-) |
| CI01000026_11215228_11222347 | SNX1B | coding | downstream | 14898 | 11214887 ~ 11222347 (-) |
| CI01000026_11123998_11200321 | AMBRA1A | coding | downstream | 36924 | 11123998 ~ 11200321 (-) |
| CI01000026_11081510_11082996 | CHRM4, CHRM4A | coding | downstream | 154249 | 11080412 ~ 11082996 (-) |
| CI01000026_11074731_11075204 | NA | coding | downstream | 162038 | 11074586 ~ 11075207 (-) |
| CI01000026_11280159_11287703 | NA | coding | upstream | 38716 | 11279171 ~ 11287703 (-) |
| CI01000026_11308038_11346628 | OTOG | coding | upstream | 67447 | 11307902 ~ 11346628 (-) |
| CI01000026_11353172_11356717 | SLC22A18 | coding | upstream | 112016 | 11352471 ~ 11356730 (-) |
| CI01000026_11363296_11365242 | NA | coding | upstream | 121636 | 11362091 ~ 11365242 (-) |
| CI01000026_11367029_11386064 | NA | coding | upstream | 126360 | 11366815 ~ 11386064 (-) |
| G133837 | NA | non-coding | downstream | 25668 | 11209845 ~ 11211577 (-) |
| G133944 | NA | non-coding | downstream | 167056 | 11069960 ~ 11070189 (-) |
| G133943 | NA | non-coding | downstream | 168943 | 11067826 ~ 11068302 (-) |
| G133924 | NA | non-coding | downstream | 259000 | 10977632 ~ 10978245 (-) |
| G133923 | NA | non-coding | downstream | 261579 | 10975381 ~ 10975666 (-) |
| G133990 | NA | non-coding | upstream | 24629 | 11265084 ~ 11265312 (-) |
| G133802 | NA | non-coding | upstream | 61460 | 11301915 ~ 11307181 (-) |
| G133828 | NA | non-coding | upstream | 108857 | 11349312 ~ 11349588 (-) |
| G133994 | NA | non-coding | upstream | 117981 | 11358436 ~ 11358728 (-) |
| G133999 | NA | non-coding | upstream | 180315 | 11420770 ~ 11421068 (-) |
| G133790 | NA | other | downstream | 399640 | 10834015 ~ 10859589 (-) |
| CI01000026_10788054_10788652 | CD59 | other | downstream | 447091 | 10787339 ~ 10789709 (-) |
| CI01000026_10347872_10351783 | CEBPA | other | downstream | 888288 | 10347746 ~ 10351783 (-) |
| G132721 | NA | other | downstream | 1686601 | 9550030 ~ 9550644 (-) |
| G132575 | NA | other | downstream | 1849529 | 9387151 ~ 9387716 (-) |
| G136110 | NA | other | upstream | 3314462 | 14554917 ~ 14555436 (-) |
| CI01000026_16756776_16760261 | RBPMS2A, RBPMS2B, RBPMS2 | other | upstream | 5516274 | 16756729 ~ 16761341 (-) |
| G137667 | NA | other | upstream | 5565909 | 16806364 ~ 16808372 (-) |
| G137914 | NA | other | upstream | 5742796 | 16983251 ~ 16984352 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
