Item | Value |
---|---|
gene id | G133802 |
gene name | NA |
gene type | misc |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000026 |
NCBI id | null |
chromosome length | 17172400 |
location | 11301915 ~ 11307181 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU152171 | False | 5152 | lncRNA | 0.40 | 2 | 11301915 | 11307181 |
TU152172 | True | 5034 | TUCP | 0.41 | 3 | 11301915 | 11307181 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000026_11280159_11287703 | NA | coding | downstream | 14212 | 11279171 ~ 11287703 (-) |
CI01000026_11226603_11231478 | SLC8B1 | coding | downstream | 70437 | 11226603 ~ 11231478 (-) |
CI01000026_11215228_11222347 | SNX1B | coding | downstream | 79568 | 11214887 ~ 11222347 (-) |
CI01000026_11123998_11200321 | AMBRA1A | coding | downstream | 101594 | 11123998 ~ 11200321 (-) |
CI01000026_11081510_11082996 | CHRM4, CHRM4A | coding | downstream | 218919 | 11080412 ~ 11082996 (-) |
CI01000026_11308038_11346628 | OTOG | coding | upstream | 721 | 11307902 ~ 11346628 (-) |
CI01000026_11353172_11356717 | SLC22A18 | coding | upstream | 45290 | 11352471 ~ 11356730 (-) |
CI01000026_11363296_11365242 | NA | coding | upstream | 54910 | 11362091 ~ 11365242 (-) |
CI01000026_11367029_11386064 | NA | coding | upstream | 59634 | 11366815 ~ 11386064 (-) |
CI01000026_11481190_11482991 | NA | coding | upstream | 173900 | 11481081 ~ 11482991 (-) |
G133990 | NA | non-coding | downstream | 36603 | 11265084 ~ 11265312 (-) |
G133981 | NA | non-coding | downstream | 61460 | 11237245 ~ 11240455 (-) |
G133837 | NA | non-coding | downstream | 90338 | 11209845 ~ 11211577 (-) |
G133944 | NA | non-coding | downstream | 231726 | 11069960 ~ 11070189 (-) |
G133943 | NA | non-coding | downstream | 233613 | 11067826 ~ 11068302 (-) |
G133828 | NA | non-coding | upstream | 42131 | 11349312 ~ 11349588 (-) |
G133994 | NA | non-coding | upstream | 51255 | 11358436 ~ 11358728 (-) |
G133999 | NA | non-coding | upstream | 113589 | 11420770 ~ 11421068 (-) |
G134000 | NA | non-coding | upstream | 114176 | 11421357 ~ 11421556 (-) |
G134001 | NA | non-coding | upstream | 117819 | 11425000 ~ 11425310 (-) |
G133790 | NA | other | downstream | 464310 | 10834015 ~ 10859589 (-) |
CI01000026_10788054_10788652 | CD59 | other | downstream | 511761 | 10787339 ~ 10789709 (-) |
CI01000026_10347872_10351783 | CEBPA | other | downstream | 952958 | 10347746 ~ 10351783 (-) |
G132721 | NA | other | downstream | 1751271 | 9550030 ~ 9550644 (-) |
G132575 | NA | other | downstream | 1914199 | 9387151 ~ 9387716 (-) |
G136110 | NA | other | upstream | 3247736 | 14554917 ~ 14555436 (-) |
CI01000026_16756776_16760261 | RBPMS2A, RBPMS2B, RBPMS2 | other | upstream | 5449548 | 16756729 ~ 16761341 (-) |
G137667 | NA | other | upstream | 5499183 | 16806364 ~ 16808372 (-) |
G137914 | NA | other | upstream | 5676070 | 16983251 ~ 16984352 (-) |
G137967 | NA | other | upstream | 5761167 | 17068348 ~ 17069433 (-) |