XLOC_008483


Basic Information

Item Value
gene id XLOC_008483
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22351365 ~ 22366522 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018949
CTCAGAGGTCATTATCAGAGCACAAATTTCTGGAAAGACGAATTATAAAGGTATCCAGCACACCCCAAATAGACCAGAGAAAGAAGAGCAATTAGATGACAAAAGACAAAATCTCCAGAGTGGAAACTGAAAACGGCGAGGAAAGTCACACCCAGACATGTTAAAGTTCTTCACCTGATCAACTGTGTCTCAACTCCGCcgatgtacatggtgagctaactggacaaactggtcacagtgggaaagccgtccataaggagg
>TCONS_00018950
CAAAGTTACTCATAGCAAGCTTTCAATTAAAGCAGATTTGAGGAGATGAATGGAAAGAGACCAGAGAAAGAAGAGCAATTAGATGACAAAAGACAAAATCTCCAGAGTGGAAACTGAAAACGGCGAGGAAAGTCACACCCAGACATGTTAAAGAGCAGTTCTTCACCTGATCAACTGTGTCTCAACTCCGCcgatgtacatggtgagctaactggacaaactggtcacagtgggaaagccgtccataaggagg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018949 False 261 lncRNA 0.44 3 22351365 22366522
TCONS_00018950 True 253 lncRNA 0.44 3 22353025 22366522

Neighbor

gene id symbol gene type direction distance location
XLOC_008482 pde9al coding upstream 2739 22333778 ~ 22348626 (+)
XLOC_008481 hepacama coding upstream 25392 22311803 ~ 22325973 (+)
XLOC_008480 spa17 coding upstream 64447 22267847 ~ 22286918 (+)
XLOC_008479 ankk1 coding upstream 326411 22014029 ~ 22024954 (+)
XLOC_008478 BX572077.3 coding upstream 348169 22003082 ~ 22003196 (+)
XLOC_008484 oafa coding downstream 23554 22390076 ~ 22431585 (+)
XLOC_008485 CR848033.1 coding downstream 47602 22414124 ~ 22414253 (+)
XLOC_008486 tlcd5a coding downstream 68938 22435460 ~ 22444746 (+)
XLOC_008487 arhgef12a coding downstream 81934 22448456 ~ 22538843 (+)
XLOC_008488 NA coding downstream 174822 22541344 ~ 22561137 (+)
XLOC_008463 BX663520.1 misc upstream 1099083 21252191 ~ 21252282 (+)
XLOC_008474 NA non-coding upstream 490948 21780598 ~ 21860417 (+)
XLOC_008472 NA non-coding upstream 631395 21707783 ~ 21719970 (+)
XLOC_008470 NA non-coding upstream 808447 21520410 ~ 21542918 (+)
XLOC_008469 dre-let-7a-2 non-coding upstream 913406 21437876 ~ 21437959 (+)
XLOC_008490 NA non-coding downstream 840637 23207159 ~ 23207464 (+)
XLOC_008492 NA non-coding downstream 900136 23266658 ~ 23268377 (+)
XLOC_008494 CR847979.1 non-coding downstream 1011549 23378071 ~ 23378188 (+)

Expression


Co-expression Network