G134120


Basic Information

Item Value
gene id G134120
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12005870 ~ 12032406 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU152532
TGCAACTTTAAGCTTTATTTGTGTATGTTTAAAAAAAAAAAAAGAAAAATAACCAGACATACAAGAGAAATAAGCCTTTTTGTCAATATTACAAAGTAAAACCTTCACAGATTTAAGTAAACAGCAAGCGATTTTCTAGTATGGTTAAAATATTTTTGTGTTGAGTGTTTTTCCCCCAAAACACAATTTATTAGTTATTGCAGTACAGCATGAACAGACATTCATGGCTTTGAAAATAACAGCACTTGATTAAAAATGCCTCAGTTCACACCAATACCAATTAACAGCATAAATATGTATCAACAAATAATACATATTCATTAGGCATCAGCAAAAAAGTACTATAACACATCAGAGTAGAAGCTTTTTAATATGTATTACTAAAAATGTGTCTATGTAGCTTGTCATCTCTTTAATTATTTTTTTCTTCTTCTTCTTCTTCCTTTTTAATACAGAAACTATGATTTTGCAAAGATTTGAGTCTCTGTTCCATATCGAAAAACAAAATGAAACACATACATGCAGTAGTTGGAGAAAAATTAAAGCCATGCTCCCAGTTCTGGAAGGACATACCACATCTGGAGTATTTTCTGAAATATTCATACAGTGCTTAAGACTGGATCAAAAGGCAGACTGGTGAAAACGTGTTCTTTCACATTGGTAAATGAATAATTTAAAAATCCTTTCCCCTCTTTCTCTTCCTGGTCTTTCCCACTTTCCTCAGTACCTCAGTCTGACCTGTTCTGTCTTCTCTCATCATCCTGTCTCTTTTTGTCTCTTCCATGGTTACTCTTTCAAGCCTCTTTTAAATATCATGTCAATCCTGAGTTTGTACTCCATCATTAAATACAAAATGCATAACTCACCAGCAAACACACAAACTTTAAAGTGCCTCACTTTTATGTTTATAATGAATTATTTTCTTCATCAAAAATATATCGAAGTGTTGAAAACAGTCTTGCAAGTAACTTGAACATACTTTACAGAATAATGAACAGATCTGTTTAATGTTTAAAAACATGAATAAATGTATTTCAGTTGGGTTTAATTATCCAATGAGTGATGTCTTTAGGCTCCTTCTTGAACTGCCTGTTTTCGACACCACAGCGATGGAGGGGGATATCCTACGATATGTTTAAAAACCATGAATGAAAGTGAGTGTGATTGTTTTTTAAACATCAGCTCAGGATAATGAAAGATTTTTGCAGCATATGCATGGTGATGGATGTGGGAAAATCATGAGTTTGTGAAATGAAAAAAAAAAAAGGTTACAACAGTTACAATAAGCAAATGTTACCAAGACTTTTATAGTGATTCGTCGACCTTTGACAACACTACATGAATGCAGCATGTACAGTGGCAGAGAGAGCTCAACGCGCTGCAAATGAAGAAAACAAATGCAAATAGAAAAAACACCAGCAAATAAAGAAAACATCTTCATCAGTTTGACAAAACATGCGCTGCAAAAGTTCACAACACATGCAATACAAAGACGCGCTGCAAAAGTTCACAACACATGCAAATACAAAAACGCGCTGCAAAAGTTCGCAACGCATGCAATACAAAAACGCGCTGCAAAAGTTCGCAACACAAGCAAATACAGAAACGCGCTGCAAAAGTTCGCAACACATGCAAATACAGAAACGCGCTGCAAAAGTTCGCAACACATGCAATACAAAAACGCGCTGCAAAAGTTTGCAACACAAGCAACATATAGAAACGCGCTGCAAAAGTTCACAACACAAACAAATACAGAAACGCGCTGCAAATAGGCCTGCTCACAATGCACATACGATCAGGATGTTAAGATAAACAAAACTCACCTTTCAGGTGCACACCACTGAAGAGTAAACATTGAACAATAAGCGGTCCCAGCCAGGTACGTTACTTGATGGTGTTCCCTTATAACATTTTCGTTGTGGTCTGTGCCAGTCCCGGTGCCAGGACAAACGATTTGGGGGGGTATTATTTTGCATGAAAAAAATATTATTAATAAATTATTAATAATAAATAATCTTTTTTTTTATATAATTTACTTGATTTTATGTCTCAAATCCCAGTCAATTATTCACTGCAGAAAGTGAAACTAAAAACTCAGCAATGAGAGATCTACTTCAACGTGTTCTGATAACACTATTTAACCTTAATTTATTTCTTAATATTTCTCTTGTGGCCCATACGTAGTGAAAAAATGAGAAGAGATGTAGGTGTTAAACAAGTAGTTTTTTTAAATGAGGAGTTAGCTAACTTATTACAGCGCGTCGGTTATGCATGATACGTGATGCGGGGCAAATTAAAATATTAATTTAATTCTAAAAGTAGCCTCATCATCATCATCATTCAGATCATCGCAGAGGGGGGCCTGGTATGTGCTATTTGCAGTGCGTTTCTGTATTTGCTCGTGTTGTAAACTTTTGCAGTACATGTGTTGTCAAACTGATGAAGATGTTTTCTTTATTTGCTGGTGTTTTTTCTATTTGCACGTGTTTTCTTCAGATGCAGCACGTTGAGCTCTCTCGGCCACTATAAGCATGTCAAAGCAGAACATTTAGAAAGAAACTTTCTACGCGCTATTTAAAAAGAATAATTTGAATAATTTGTGTGACAGTATTTAATGTCTTTATATCCCCTCAGTTTTTAGAAAATGAACAGTAAAGACAACACACAAAAAATATACTGCATAAAGTAACAATTGTTAGAACCACACCCCAATCCGAGGAGCCAGTCTTGGCATCCGCTTCTTTTTGGTGTCAGACTCCTTCAGCAATAGCTTCTTTCTCCTGGAGTCAAAAAACCCTTTGGCAAGTCCCAGATTCTGCAGGCCTCTGTCCTCCACCTCCTCCTCCTCTGAAGGGTTCTGGGCCACATTTCGGAGGTACCGGTTGTGTGGGGCAGTGCTAGAGAGAGCGTTCTGTCTGCGGCTTTCCTCCAATGCATTGTCATCAGAAATACCATTGACTGTGAGAGATCTGAGCTGACCGTCCTCCTCTACCTCCACTCTCTCTTGACCGTTCTCTACAATACGTTTGGTGGTGATTCTCCTTCCGTTGATGAATTTGGTGGATGTGGAGACAGAGCGGAAGTTTCCCATTCCACCTCCACCACCAAATGAAGAGGAGGAAAATGAGGTTAAACCACCCCCACCCATTGGGCCAAACGGAGTGAATCCTGTGTCAAACCCAGAAAAGGCGGGACCAAATGGAGAAAATCCGGGAAAGAATGAACCTGTCGTCCTGCTCCTGCTCACACCCCTATGACGCCGACCACCACCAAAGAAATCCTCAAAGGGGTCATCAGCAAAGAAATCTGCAAAATTTGCAAATGGATCTCGGCCTCCAAAGAATTCCCTGAAGACATCTTCTGGATTACGGAATGTGAATCCGCCCATGAAATCCTCATCATAATGGCCACCTCTATTAGAGAGGCCTTCTTTACCATATCTATCATACTGTCTCCGTTTGTTTTCATCTGACAGGACTTCATATGCTTCTGAGATCTCTTTAAACCTGATCTCTGCCTCTTCTTTTATGTCTGGGTTTTTGTCTGGATGCCACTTTAGTGCTTGTTTTCTGTACGCTTTCTTTATATCATCATGGGATGCATTTTTCGTCACACCCAGGATCTCGTAATAATCCCCCATGGCTCAGGTTTTGGTTTTCCACCCCACTGGTTGACAAATTTTCAGCAGTGGCCCTTACGTAACGAAGACAAGTGTCCTTATCCCGGTGCTTTATTTGGACCTCCGCTGTGTATCCCAGTGATGAGGTCGAGTTTCTTTATTTGAAATACTATTCCAGCAGGGGTTATTCTGTTTGGTCCGAGGTCTGTCCGTTTATAAAACAGTCTCAGGTGATCGGAGTAACTTCCCTATGTGAAAGACAGAGATGTATATGTGTGAATCTTTATCACTGAAATTGGGCTGTCGCTAATGTTCTCCAACAATCCTCCGACCTCTATAAAGCGACTTGATTCTAGT
>TU152533
ACACACACACGCATTTATCAAGTCATTCAAATGTATTAAACAAATATGTAGATAAATGGTCTTTGATTAATAAAAAAAAAAAAAAAAAAGATGAATAATAATAATAATAATAATAATTTCTAAGGGTGTGCAGCTGAAAAATTTATTTTGCTGCAATTGATGGGTAACTGTCTTGCCCGAATAACATCTGCTGTTTCGGCTTTTTCTCCAAGGCCACGGAAACATGGTAGTGCGCTTGTGTTTTAGTTACGCACTTCATTCCACCAGGCATTTTTTTTCCCCTTATTTATTTAAATCTAGAATAATTGATTAACAAATCATCGATTGAAATTAAGATATAAATTATACAAAACGAAATACTACAAACAAACTTATGAAGTGGTCAAAAATCGTCTCTGACCCACTCCATATCTCCCGACATATTGAATTCAATCCATTTCCACGCCCTATGTGACGTATCCAATTTACGCTTTCTTTCTTTCTTAATTAACATAGATTACATTAAACCAAAACATAAATAAACATTACAATACTGAAACAAAAATATAAACTAAATAAGTTTTCTTGAATGGCTACATCATCTGCATTTGATCAGTTTCTGAAGAACAATAACACTGTGGCATGAGGTAAGAGAGCTTGTCAAAGTATTTCTCTCTCCCCTGTTTTTATACCACAGTGCGTCTCTGTTTCACCCTCACCAGTGTCACAGAGGGCACAAACTCGTTCTTCTTTTGGCAGTCATGTCTTTGTCTATTCTGCCTTTTTTTATTGGCAAACTATATCTGTGTTATTATCATGGAGTGCCGAGAACATTAGAAGTGATGGATTGAGACAAACACACATTAATAAAGGCAAGCAGCAAAGAGCAGAGGTCTCACATGGACGGTATCAACTAACCCCTGTGTTGCACAGTCACTGTTATCATTACTGCTCTACTATGTCCCCTGTGTAAAAATAGATGGCCATGACAGGACACAGAGTACTTACGCTTTCTTTATATCATCATGGGATGCATTTTTCGTCACACCCAGGATCTCGTAATAATCCCCCATGGCTCAGGTTTTGGTTTTCCACCCCACTGGTTGACAAATTTTCAGCAGTGGCCCTGGAAAGAGAGAGAGAGAGAGCTTACGTAACGAAGACAAGTGTCCTTATCCCGGTGCTTTATTTGGACCTCCGCTGTGTATCCCAGTGATGAGGTCGAGTTTCTTTATTTGAAATACTATTCCAGCAGGGGTTATTCTGTTTGGTCCGAGGTCTGTCCGTTTATAAAACAGTCTCAGGTGATCGGAGTAACTTCCCTATGTGAAAGACAGAGATGTATATGTGTGAATCTTTATCACTGAAATTGGGCTGTCGCTAATGTTCTCCAACAATCCTCCGACCTCTATAAAGCGACTTGATTCTAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU152532 False 3976 lncRNA 0.39 11 12005870 12032406
TU152533 True 1410 lncRNA 0.38 2 12026411 12032406

Neighbor

gene id symbol gene type direction distance location
CI01000026_11862091_11976290 PTPRN2 coding upstream 29580 11862091 ~ 11976290 (+)
CI01000026_11809092_11810238 NA coding upstream 195459 11808462 ~ 11810411 (+)
CI01000026_11792044_11807684 NCAPG2 coding upstream 197596 11792044 ~ 11808274 (+)
CI01000026_11756587_11788914 ESYT2B coding upstream 216798 11756587 ~ 11789072 (+)
CI01000026_11705009_11707949 NA coding upstream 297794 11705009 ~ 11708076 (+)
CI01000026_12074163_12076475 MNX1 coding downstream 41407 12073813 ~ 12077540 (+)
CI01000026_12094316_12125431 NA coding downstream 61910 12094316 ~ 12126264 (+)
CI01000026_12192269_12200366 NA coding downstream 159246 12191652 ~ 12200734 (+)
CI01000026_12203244_12209526 SHH, SHHA coding downstream 168952 12201358 ~ 12209698 (+)
CI01000026_12425699_12438163 NA coding downstream 391673 12424079 ~ 12438621 (+)
G134145 NA non-coding upstream 92438 11912221 ~ 11913432 (+)
G134141 NA non-coding upstream 114268 11861568 ~ 11891602 (+)
G133608 NA non-coding upstream 253695 11751165 ~ 11752175 (+)
G133596 NA non-coding upstream 271865 11733745 ~ 11734005 (+)
G133594 NA non-coding upstream 273056 11731811 ~ 11732814 (+)
G134197 NA non-coding downstream 111103 12143509 ~ 12143787 (+)
G134201 NA non-coding downstream 118113 12150519 ~ 12150775 (+)
G134215 NA non-coding downstream 162778 12195184 ~ 12195417 (+)
G134217 NA non-coding downstream 164095 12196501 ~ 12196758 (+)
G134218 NA non-coding downstream 164684 12197090 ~ 12197300 (+)
G133542 NA other upstream 528963 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 750797 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 926790 11075784 ~ 11079080 (+)
G133192 NA other upstream 1843909 10159819 ~ 10161961 (+)
G132667 NA other upstream 2436710 9568739 ~ 9569160 (+)

Expression


Co-expression Network