XLOC_008488


Basic Information

Item Value
gene id XLOC_008488
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22541344 ~ 22561137 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018951
CGCACGCAAGCTTTGCTTAATGACGCCTAAGTTACGTGGACGCAAACTCAAATGAGCCCACACTGTTTTAGCAATGGCGGCGGATATGAGCGTGTTCCTCAAAGTGGATTCATAGTCTATTAAAATATATCCTAACCATTACCTCCTGCATACTAATGTGTGTACTAAAACATACTTTCCACATTAGAGTACATTATTTGGTAGTAGCAGGTGAATTTGAAGAGGAGGTTATTGACTTCAGACTCCAAACGTTTAGGCCTTCATTAAGCGACAAGACGTTGAACTTGATTTTCACTTGCTCGAAGatttggcatgctgtcccggtagagaaccctgagcttgaaGATACTTGAGCCTAGGTCTCCCGTCTGGTCATGtagctccccctggtaaaagaGGAAAGGTGGATGGTGGGGTTCCTCGAAACGAAGGAAGGGAGTCGCTCAGCTCAACTTCATAAG
>TCONS_00018952
TGACGCCTAAGTTACGTGGACGCAAACTCAAATGAGCCCACACTGTTTTAGCAATGGCGGCGGATATGAGCGTGTTCCTCAAAGTGGATTCATAGTCTATTAAAATATATCCTAACCATTACCTCCTGCATACTAATGTGTGTACTAAAACATACTTTCCACATTAGAGTACATTATTTGGTAGTAGCAGGTGAATTTGAAGAGGAGGTTATTGACTTCAGACTCCAAACGTTTAGGCCTTCATTAAGCGACAAGACGTTGAACTTGATTTTCACTTGCTCGAAGatttggcatgctgtcccggtagagaaccctgagcttgaaGATACTTGAGCCTAGGTCTCCCGTCTGGTCATGtagctccccctggtaaaagaGGAAAGGTGGATGGTGGGGTTCCTCGAAACGAAGGAAGCAGATGCCGTTCCCGTACATTACGAC
>TCONS_00018953
TGACGCCTAAGTTACGTGGACGCAAACTCAAATGAGCCCACACTGTTTTAGCAATGGCGGCGGATATGAGCGTGTTCCTCAAAGTGGATTCATAGTCTATTAAAATATATCCTAACCATTACCTCCTGCATACTAATGTGTGTACTAAAACATACTTTCCACATTAGAGTACATTATTTGGTAGTAGCAGGTGAATTTGAAGAGGAGGTTATTGACTTCAGACTCCAAACGTTTAGGCCTTCATTAAGCGACAAGACGTTGAACTTGATTTTCACTTGCTCGAAGatttggcatgctgtcccggtagagaaccctgagcttgaaGATACTTGAGCCTAGGTCTCCCGTCTGGTCATGtagctccccctggtaaaagaGGAAAGGTGGATGGTGGGGTTCCTCGAAACGAAGGAAGGCTTTCTGTGGTAGCCTGTTGGTGGAATGCCAGAGCCGTTACGCAGCTGTCTGTCTGAGAGAGAAGAGGAATCTATACTTCTGGctgacacaaacacaacagcac

Function

GO: NA

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018951 False 461 lncRNA 0.45 3 22541344 22551028
TCONS_00018952 False 441 lncRNA 0.45 3 22541364 22558972
TCONS_00018953 True 520 lncRNA 0.46 3 22541364 22561137

Neighbor

gene id symbol gene type direction distance location
XLOC_008487 arhgef12a coding upstream 2501 22448456 ~ 22538843 (+)
XLOC_008486 tlcd5a coding upstream 96598 22435460 ~ 22444746 (+)
XLOC_008484 oafa coding upstream 109759 22390076 ~ 22431585 (+)
XLOC_008485 CR848033.1 coding upstream 127091 22414124 ~ 22414253 (+)
XLOC_008483 NA coding upstream 174822 22351365 ~ 22366522 (+)
XLOC_008489 grik4 coding downstream 161545 22722682 ~ 23188894 (+)
XLOC_008490 NA coding downstream 646022 23207159 ~ 23207464 (+)
XLOC_008491 cbl coding downstream 646905 23208042 ~ 23265405 (+)
XLOC_008492 NA coding downstream 705521 23266658 ~ 23268377 (+)
XLOC_008493 rnf26 coding downstream 795463 23356600 ~ 23358807 (+)
XLOC_008463 BX663520.1 misc upstream 1289062 21252191 ~ 21252282 (+)
XLOC_008478 BX572077.3 non-coding upstream 538148 22003082 ~ 22003196 (+)
XLOC_008474 NA non-coding upstream 680927 21780598 ~ 21860417 (+)
XLOC_008472 NA non-coding upstream 821374 21707783 ~ 21719970 (+)
XLOC_008494 CR847979.1 non-coding downstream 816934 23378071 ~ 23378188 (+)
XLOC_008496 NA non-coding downstream 906847 23467984 ~ 23505657 (+)
XLOC_008505 NA non-coding downstream 1438432 23999569 ~ 24005283 (+)

Expression


Co-expression Network