XLOC_008495 (phykpl)


Basic Information

Item Value
gene id XLOC_008495
gene name phykpl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23443665 ~ 23451449 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016991
tctCCCTCCCTCTCCCTTTTCTTTGGTTCAAAGTCTTGCCAGATGTCTTCAGGCTGTAAAAACAGTCGGCTTTAGCAGAAGACCTCGTCGTTTAAAATGGCTGTTGAACTTTTTCACAAAAATGAGACTTTGCAAATGCGCAAGAAGCTGATTGCACAGTCCTGCAGACTCTTTTTCTCCCATGATCCTGTGAAAATAGTCCGAGCACGGGGTCAATATTTATACGACGAGAATGGCACGCAGTATTTAGATTGCATTAGTAATGTTCAACATGTGGGTCACAGTCACCCCAGCATCACTCAGGTGGCTGGCGCTCAGATGGATCTTCTGAACACAAACACTAGATTCCTTCATGATAATATAGTGCAGTATGCTGATCGACTGGCTGCCACTCTCCCAAAGAAACTTTCTGTCTTCTATTTTGTCAACTCAGGATCAGAGGCTAACGATCTGGCCTTGAGACTGGCCCGTCAGTACACCAGACATCAGGATGTGATCGTTCTAGATCATGCATATCATGGACATCTGACCTCGCTTATTGATATCAGCCCATACAAGTTCAGGAAACTGGAGGGCCAGAAAGAGTGGGTTCATGTGGCACCTCTCCCTGATACTTACCACGGTATCTATCGAGAAGATCATCCTGAGCCTGGACAGGCTTATGCAGACACGGTCAAAAGCCTGATTGAAGAGGCGCATAAGAAAGGTCGCAAGATTTCATCTTTTTTTGCTGAGTCTTTACCCAGCGTTGGAGGTCAAATCATTTTCCCCACTGGATATTGTAAAAGAGTAGCAGAATATGTTCATGAAGCAGGAGGGGTTTATGTGGCAGATGAGATTCAGACAGGCTTTGGTCGTGTTGGGAGTCATTTCTGGGCGTTTCAGCTTGAGGGTGAAGATTTCTGCCCTGACATTGTGACCATGGGCAAACCGATGGGCAACGGTCATCCCATTGCATGCGTGGTCACTACAGAGGAGATCGCTGGTGCTTTTACAGCCAATGGAGTGGAGTACTTCAACACATTTGGTGGTAACCCAGTGTCCTGCGCCATTGGTCTGGCAGTTTTAGATGTGATAGAGAAGGAAGATCTCAGAGGCAATGCGGTGCGTGTCGGAGGTCATCTTAAACAGCTGCTCCTTCAGCTTCAGGAAAAACATCTACTCATCGGAGATGTGcgTGGTGTTGGGCTGTTTATAGGTATGGAGCTTGTTAAAGACAGAGAGTCCCGAGAACCAGCAACAGAAGAAGCAGCACATCTAGTCCGAAGGCTGAAAGAGGATCGTATAGTGATGAGCACAGATGGACCATGGGACAGTGTCATCAAATTCAAACCTCCAATGTGCTTCAGCAAGGAGGATGCTAATAGAGTTGTTACATGCATTGACCAAATTCTTACAGAACTGGAGGATGTCCAAAAAGAGGACTGCGGAAAAAGTTGAGGTTTAAAAAAAGCTTCTTGATAaaatttattaatgatttcaCATGTAAAAACTGATCGAAACACATAGTAAACGTCATGTTATTTGCATTCTTAAATATACATCGATTGACATTCAGAGCACAATTCAAAACACTTTGAACTGAATTTACTTAAGCTACACACCtgacaatatttgtgaaataaatcttaaatcaGCATATTGACACAAAGTCACAGATAACTACACATATTATTTACCAGAATGAGACATGAGCAAATATTAagacatttagcattttaacgTTTTATAGtcctaaaactaaatatatatatttttttctttttgaaaaccAAATTGTACACAACTCCTCCTGCATGATCTTTATATTACACATGTACTGCTCATTTTTAATAGTGACTAAAATAAAAGTGGTTATTGACAAGCAA
>TCONS_00016992
CTCTCCCTTTTCTTTGGTTCAAAGTCTTGCCAGATGTCTTCAGGCTGTAAAAACAGTCGGCTTTAGCAGAAGACCTCGTCGTTTAAAATGGCTGTTGAACTTTTTCACAAAAATGAGACTTTGCAAATGCGCAAGAAGCTGATTGCACAGTCCTGCAGACTCTTTTTCTCCCATGATCCTGTGAAAATAGTCCGAGCACGGGGTCAATATTTATACGACGAGAATGGCACGCAGTATTTAGATTGCATTAGTAATGTTCAACATGTGGGTCACAGTCACCCCAGCATCACTCAGGTGGCTGGCGCTCAGATGGATCTTCTGAACACAAACACTAGATTCCTTCATGATAATATAGTGCAGTATGCTGATCGACTGGCTGCCACTCTCCCAAAGAAACTTTCTGTCTTCTATTTTGTCAACTCAGGGTAAGTGGCTTTTCATTGGGTTTAAAAGCACTGTTCAACAAAATCTTTAAG
>TCONS_00016993
CCTCGCTTATTGATATCAGCCCATACAAGTTCAGGAAACTGGAGGGCCAGAAAGAGCACCTCTCCCTGATACTTACCACGGTATCTATCGAGAAGATCATCCTGAGCCTGGACAGGCTTATGCAGACACGGTCAAAAGCCTGATTGAAGAGGCGCATAAGAAAGGTCGCAAGATTTCATCTTTTTTTGCTGAGTCTTTACCCAGCGTTGGAGGTCAAATCATTTTCCCCACTGGATATTGTAAAAGAGTAGCAGAATATGTTCATGAAGCAGGAGGGGTTTATGTGGCAGATGAGATTCAGACAGGCTTTGGTCGTGTTGGGAGTCATTTCTGGGCGTTTCAGCTTGAGGGTGAAGATTTCTGCCCTGACATTGTGACCATGGGCAAACCGATGGGCAACGGTCATCCCATTGCATGCGTGGTCACTACAGAGGAGATCGCTGGTGCTTTTACAGCCAATGGAGTGGAGTACTTCAACACATTTGGTGGTAACCCAGTGTCCTGCGCCATTGGTCTGGCAGTTTTAGATGTGATAGAGAAGGAAGATCTCAGAGGCAATGCGGTGCGTGTCGGAGGTCATCTTAAACAGCTGCTCCTTCAGCTTCAGGAAAAACATCTACTCATCGGAGATGTGcgTGGTGTTGGGCTGTTTATAGGTATGGAGCTTGTTAAAGACAGAGAGTCCCGAGAACCAGCAACAGAAGAAGCAGCACATCTAGTCCGAAG

Function

symbol description
phykpl Predicted to enable pyridoxal phosphate binding activity and transaminase activity. Orthologous to human PHYKPL (5-phosphohydroxy-L-lysine phospho-lyase).

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051127-33 Predicted to enable pyridoxal phosphate binding activity and transaminase activity. Orthologous to human PHYKPL (5-phosphohydroxy-L-lysine phospho-lyase).

Ensembl:

ensembl_id ENSDARG00000040566

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016991 False 1868 mRNA 0.42 12 23443665 23451449
TCONS_00016992 False 476 lncRNA 0.43 3 23443674 23445988
TCONS_00016993 True 726 processed_transcript 0.48 6 23446189 23450686

Neighbor

gene id symbol gene type direction distance location
XLOC_008494 CR847979.1 coding upstream 65477 23378071 ~ 23378188 (+)
XLOC_008493 rnf26 coding upstream 84858 23356600 ~ 23358807 (+)
XLOC_008492 NA coding upstream 175288 23266658 ~ 23268377 (+)
XLOC_008491 cbl coding upstream 178260 23208042 ~ 23265405 (+)
XLOC_008490 NA coding upstream 236201 23207159 ~ 23207464 (+)
XLOC_008496 NA coding downstream 16535 23467984 ~ 23505657 (+)
XLOC_008497 si:dkey-182i3.9 coding downstream 71888 23523337 ~ 23542144 (+)
XLOC_008498 MARK4 coding downstream 99441 23550890 ~ 23641516 (+)
XLOC_008499 klc3 coding downstream 205602 23657051 ~ 23677446 (+)
XLOC_008500 sae1 coding downstream 271171 23722620 ~ 23739104 (+)
XLOC_008463 BX663520.1 misc upstream 2191383 21252191 ~ 21252282 (+)
XLOC_008488 NA non-coding upstream 882528 22541344 ~ 22561137 (+)
XLOC_008485 CR848033.1 non-coding upstream 1029412 22414124 ~ 22414253 (+)
XLOC_008505 NA non-coding downstream 548120 23999569 ~ 24005283 (+)
XLOC_008506 NA non-coding downstream 681105 24132554 ~ 24132837 (+)
XLOC_008507 NA non-coding downstream 698519 24149968 ~ 24162100 (+)
XLOC_008508 NA non-coding downstream 728483 24179932 ~ 24205981 (+)

Expression


Co-expression Network