G136107


Basic Information

Item Value
gene id G136107
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14576171 ~ 14579318 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU154694
TTTCAGGTGGGGTTTTTAGAGCTGATTCCTCATATGCATAAAGTTTATCCCATTTCCAATCTCTCTTATGTCTTTGGAGTACTATGCTCGGCATAGATGGTTTTTTCAGAGCTTTCTGGACATCAGCTCCCATGCTGAGGGTACATAAAACGACCAGGATACCTGCCCAGCATCCAGGCTCAGTCATCTGCCTCCAGGCAGACAGTTTCATCATCTGTGGACCTAGAGTTTTGTTCCCTTCAACAGTCTTTCTTGATTTGAAAATCCCTACAGTGAATGAGTCGAGTTATATCCTCCTCAGTTTCAGGTCAGTGGTGTCTGTTTCCAGCTGCATGTGAACCTGTCTGAGCTCCCACAGAGCTGCTCGCTGGACAATCAGGCCACTCCAGTGGCTAAAGTGATCAGCCCAACCCAGCCGTTCCTCTGGCAGCTTCCTGTTATTGTCCCTGCCTCTTTAGTCCAGCTCCAAACCCCTCTCTGGAAAATCAGATAACATTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU154694 True 500 lncRNA 0.48 2 14576171 14579318

Neighbor

gene id symbol gene type direction distance location
CI01000026_14376741_14381102 NA coding downstream 194078 14376570 ~ 14382093 (-)
CI01000026_14156809_14170720 CDH11 coding downstream 405451 14156349 ~ 14170720 (-)
CI01000026_13744060_13791879 CDH8 coding downstream 784292 13744060 ~ 13791879 (-)
CI01000026_13299234_13300178 NA coding downstream 1275231 13298482 ~ 13300940 (-)
CI01000026_13082079_13210565 ITFG1 coding downstream 1365606 13082079 ~ 13210565 (-)
CI01000026_14680424_14682203 TK2 coding upstream 101041 14680359 ~ 14682203 (-)
CI01000026_14684215_14684738 NA coding upstream 104885 14684203 ~ 14685091 (-)
CI01000026_14697383_14715245 CMTM4 coding upstream 117725 14697043 ~ 14715245 (-)
CI01000026_14720591_14737569 DYNC1LI2 coding upstream 140498 14719816 ~ 14737569 (-)
CI01000026_14780225_14789500 NAE1 coding upstream 200770 14780088 ~ 14790709 (-)
G136118 NA non-coding downstream 1448 14574466 ~ 14574723 (-)
G135927 NA non-coding downstream 113594 14462277 ~ 14462577 (-)
G135917 NA non-coding downstream 127332 14448606 ~ 14448839 (-)
G135886 NA non-coding downstream 172057 14403897 ~ 14404114 (-)
G135771 NA non-coding downstream 241263 14334571 ~ 14334908 (-)
G136103 NA non-coding upstream 10612 14589930 ~ 14636003 (-)
G136129 NA non-coding upstream 27333 14606651 ~ 14607579 (-)
G136156 NA non-coding upstream 58202 14637520 ~ 14637980 (-)
G136170 NA non-coding upstream 87027 14666345 ~ 14666577 (-)
G136214 NA non-coding upstream 272449 14851767 ~ 14852100 (-)
G136110 NA other downstream 20735 14554917 ~ 14555436 (-)
G133802 NA other downstream 3268990 11301915 ~ 11307181 (-)
G133790 NA other downstream 3738566 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 3786017 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 4227214 10347746 ~ 10351783 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 2177411 16756729 ~ 16761341 (-)
G137667 NA other upstream 2227046 16806364 ~ 16808372 (-)
G137914 NA other upstream 2403933 16983251 ~ 16984352 (-)
G137967 NA other upstream 2489030 17068348 ~ 17069433 (-)

Expression


Co-expression Network