XLOC_008496


Basic Information

Item Value
gene id XLOC_008496
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23467984 ~ 23505657 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018956
gttttttaatttaattttaatttaaaataatgacaaaagtctTTAATCAGCACTTTTTATTTTGCTGATCTCAGTCACAATTTGTTagttcaaatgtgttttttttttaatcaaggcATAAGATATGTGAACATTGTAGAAGCATTCTAAATCCTTGCCTTGGTTAAGATTGCACCATttgacacttaaagggatagttcacctcaaaaaaagaaaacttccacatcatttactctccctcatgtggttctAAATTGGTaagaatttatttctttttttgaaaacaaaacaaaatattatgaataatgcTGGAAAAAAGCAGTCATTGTCATCCACTGTAGGACCAAAAACCTAATCGCTGTTTTTGCCCCAACATTCTTCTGTATATCTTTCTTTGTGGTCAGAAAAAATGATCAACCAGGTTTTAAACAAAgtgatgagtaaatgacagaattttatttatttatttatttttgggtgaactattcctttaaacacATAAGAGTTTATATGAACTGTACGTTCTCCCTGAACACATATGCATAGGAAATGGCTTCAAATGGCATCATTTGTTATCGTGCAATAATGAGCAATTTTCAAGTAGTAATCCAAAATAGTCTGGTGCAGCAAATATCAGTCTTTccctaaaataatcaaatatactCATTTTGTCACAGTGTTTTCTGAAATTGACCTAATGCTAAAATAGATAGCATAACATGCACATAAATCAACACTTTGCAAAACACCTAGGAAATGTTAAGGCTAATTATAACATTAACAACAAAAATCCAATTGAGAAACTAAACCCCCATTCCTTTAGAGCTAAAGATAATTCATTTAGTACCAGTTCCTGTATCGCTGCTTTTCTCTATAAAGCGCAGCATTTGCCTCACAACACTCTCTACTCTTCGAAAGTGCATCTTTTTCCAAAAACTCAGGTGCTGTTTCCTCCCCCATTCGAGGTCTTTCAGAAAAACCAGCAGTTGCTCACGTACACGGTCTCTTTCCCAGGAAAGGGAATTTTTCCCAATGACACTCAAAATGGGATGCCAATCCTCAGAGATGTCCGAACCCTCGGTCACAGAAGCCAGGACTTTCACCCGCCGGCCCTCCTTCACCCGAGGACCTCCACGCACATATAAAGACTGCTTGGCCACGTCGGGTCCTTCCCTGATGGTGTAGCAGAGCTCTTTGAACTCCAGCTCCACAGTGGtgcgtttgggcaggtgagagaAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018956 True 1240 lncRNA 0.37 2 23467984 23505657

Neighbor

gene id symbol gene type direction distance location
XLOC_008495 phykpl coding upstream 16535 23443665 ~ 23451449 (+)
XLOC_008494 CR847979.1 coding upstream 89796 23378071 ~ 23378188 (+)
XLOC_008493 rnf26 coding upstream 109177 23356600 ~ 23358807 (+)
XLOC_008492 NA coding upstream 199607 23266658 ~ 23268377 (+)
XLOC_008491 cbl coding upstream 202579 23208042 ~ 23265405 (+)
XLOC_008497 si:dkey-182i3.9 coding downstream 17680 23523337 ~ 23542144 (+)
XLOC_008498 MARK4 coding downstream 45233 23550890 ~ 23641516 (+)
XLOC_008499 klc3 coding downstream 151394 23657051 ~ 23677446 (+)
XLOC_008500 sae1 coding downstream 216963 23722620 ~ 23739104 (+)
XLOC_008501 ift20 coding downstream 279185 23784842 ~ 23790172 (+)
XLOC_008463 BX663520.1 misc upstream 2215702 21252191 ~ 21252282 (+)
XLOC_008490 NA non-coding upstream 260520 23207159 ~ 23207464 (+)
XLOC_008488 NA non-coding upstream 906847 22541344 ~ 22561137 (+)
XLOC_008485 CR848033.1 non-coding upstream 1053731 22414124 ~ 22414253 (+)
XLOC_008505 NA non-coding downstream 493912 23999569 ~ 24005283 (+)
XLOC_008506 NA non-coding downstream 626897 24132554 ~ 24132837 (+)
XLOC_008507 NA non-coding downstream 644311 24149968 ~ 24162100 (+)
XLOC_008508 NA non-coding downstream 674275 24179932 ~ 24205981 (+)
XLOC_008509 NA non-coding downstream 686053 24191710 ~ 24198497 (+)

Expression


Co-expression Network