G136846


Basic Information

Item Value
gene id G136846
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 15410008 ~ 15410383 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU155489
CTTTCTTAATTCTCAATTTTTTTGTAGACAAAGTTTTATTGTTCCAAATGGCAAACATCTGCTTTATGTAGTCTGCTTTTTTTTTTATTATTATTATTTAATGAAGTATAGAAGTGTAAGAGTTACTGGTTTTGCTGGTGTATAGCGGTTCCTTTTGTTTTGACTCAAAATTTAATTCCCATTAATTAAAAAAAAAAAAAAAAACTTTTATTCATTCTCATAAAATTAAAGGTAAACTTTATTACAATGGTGTTTGTTTAATTGGATAATACATGTTTCGAGTCTGAAATAAGGAGCTACAGTTTGACCTGCATTAGCCAAACTTGTTCCTCAAACCAGCAGTGATGCTAATTAATTTTAAATGGGAAAATAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU155489 True 376 lncRNA 0.27 1 15410008 15410383

Neighbor

gene id symbol gene type direction distance location
CI01000026_15217144_15334733 NA coding downstream 74833 15216946 ~ 15335175 (-)
CI01000026_15189520_15194928 NA coding downstream 215037 15189321 ~ 15194971 (-)
CI01000026_15050306_15051326 NA coding downstream 356722 15049040 ~ 15053286 (-)
CI01000026_14914431_14918358 VSTM2B coding downstream 490813 14913882 ~ 14919195 (-)
CI01000026_14904913_14906047 NA coding downstream 503914 14904746 ~ 14906094 (-)
CI01000026_15410940_15426472 SHCBP1 coding upstream 417 15410800 ~ 15426472 (-)
CI01000026_15444272_15445552 NA coding upstream 33669 15444052 ~ 15445552 (-)
CI01000026_15457228_15461956 NA coding upstream 46815 15457198 ~ 15461956 (-)
CI01000026_15604078_15614242 NA coding upstream 193581 15603964 ~ 15614655 (-)
CI01000026_15617263_15620665 NA coding upstream 206537 15616920 ~ 15620947 (-)
G136845 NA non-coding downstream 2216 15407512 ~ 15407792 (-)
G136609 NA non-coding downstream 66595 15343210 ~ 15343413 (-)
G136377 NA non-coding downstream 332169 15076811 ~ 15077839 (-)
G136344 NA non-coding downstream 349834 15059950 ~ 15060174 (-)
G136214 NA non-coding downstream 557908 14851767 ~ 14852100 (-)
G136860 NA non-coding upstream 26361 15436744 ~ 15437063 (-)
G136865 NA non-coding upstream 64121 15474504 ~ 15474708 (-)
G136924 NA non-coding upstream 147426 15557809 ~ 15558085 (-)
G136935 NA non-coding upstream 156676 15567059 ~ 15567794 (-)
G136946 NA non-coding upstream 165858 15576241 ~ 15576466 (-)
G136110 NA other downstream 854572 14554917 ~ 14555436 (-)
G133802 NA other downstream 4102827 11301915 ~ 11307181 (-)
G133790 NA other downstream 4572403 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 4619854 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 5061051 10347746 ~ 10351783 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 1346346 16756729 ~ 16761341 (-)
G137667 NA other upstream 1395981 16806364 ~ 16808372 (-)
G137914 NA other upstream 1572868 16983251 ~ 16984352 (-)
G137967 NA other upstream 1657965 17068348 ~ 17069433 (-)

Expression


Co-expression Network