G137739


Basic Information

Item Value
gene id G137739
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 16624848 ~ 16625128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU156463
TGCCCACTACTGGCGAAAACTTTGCAATGGGCTGAATTGGAACTTCCTAAGCCCTTGATCACTTGGAATCCGCAATGGAGCTGATTTATTATTTATTTTTTCCCTTTACAAAATTGTTTAATGCAGCATTCTATATGTATATAAGTGTGTTTTAAATATTTAAAAAAAATAATTTATATATCATAGAGTTGTTTGTGGTGGGGTAAATTAAACGCGATATGCGGTGACGTCACAATTGTGTTGCATTGTGGGTTATGGAGCTGCCTGAAGTGTACATATGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU156463 True 281 lncRNA 0.35 1 16624848 16625128

Neighbor

gene id symbol gene type direction distance location
CI01000026_16553812_16554906 NA coding downstream 68965 16553382 ~ 16555883 (-)
CI01000026_16432592_16456842 NA coding downstream 168006 16432527 ~ 16456842 (-)
CI01000026_16297047_16419596 NA coding downstream 205109 16296642 ~ 16419739 (-)
CI01000026_15930136_15933539 TSHZ3B, TSHZ3 coding downstream 691309 15929803 ~ 15933539 (-)
CI01000026_15780006_15782114 NA coding downstream 842573 15779650 ~ 15782275 (-)
CI01000026_16645459_16698069 MTSS1L coding upstream 20136 16645264 ~ 16698069 (-)
CI01000026_16739750_16751270 CPEB1B coding upstream 114120 16739248 ~ 16751465 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 coding upstream 131648 16756729 ~ 16761341 (-)
CI01000026_16817010_16832208 SIN3AB coding upstream 191167 16816295 ~ 16832208 (-)
CI01000026_16959659_16962519 CDKN1CA coding upstream 334145 16959273 ~ 16963221 (-)
G137723 NA non-coding downstream 16148 16608495 ~ 16608700 (-)
G137715 NA non-coding downstream 26346 16598264 ~ 16598502 (-)
G137682 NA non-coding downstream 278507 16337879 ~ 16346341 (-)
G137671 NA non-coding downstream 330180 16293614 ~ 16294668 (-)
G137640 NA non-coding downstream 377007 16247638 ~ 16247841 (-)
G137751 NA non-coding upstream 9053 16634181 ~ 16634408 (-)
G137678 NA non-coding upstream 158276 16783404 ~ 16784247 (-)
G136110 NA other downstream 2069412 14554917 ~ 14555436 (-)
G133802 NA other downstream 5317667 11301915 ~ 11307181 (-)
G133790 NA other downstream 5787243 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 5834694 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 6275891 10347746 ~ 10351783 (-)
G137667 NA other upstream 181236 16806364 ~ 16808372 (-)
G137914 NA other upstream 358123 16983251 ~ 16984352 (-)
G137967 NA other upstream 443220 17068348 ~ 17069433 (-)

Expression


Co-expression Network