XLOC_008505


Basic Information

Item Value
gene id XLOC_008505
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23999569 ~ 24005283 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017015
GTTAGTGTGACGTGGGCCTTTTGGTTCTCAGGACTGTCTCGTACATGCGTCTCGCCACTTTAGGCTGGCGTTTGGCTCTACTCTGACCTTGGTAAGAGAGGTACGCTGACTGTTTGGAGCTGCTGTAAAGGGATCTCAGAGCCAAGAACCGCCTCCTCTTTCCAGCATTGTGGGTCTTGTTTATCTGAAGTTTGTGACCTCATATAACATAACTGTGAAGACCAGCATCCATTGTGGCAGCCTCTTGTCTGCTGGTCGCTCCATCTGTCACTCATCTTTTCACCCCGTCTTCCCTCCCTCATCAAACCCTTACCCGGCCCAGCCCATGACAGCAGCGTTGCCAGCATGGCATTCTCATCACGCTTTTCCTTCTGGGAGCAAAAGATCAAAGAAGAGAACAAGCCAATCCCCAAGGGCTCAAAAGACAATTCTGACAGTGATGGCAGCCTGAGTAGCCGCTCCCAGTCAGTGCCCAGCCTAGAGCCTGGCAAAGGCCTTCTGCGTACCAAGAGTCCTCAGCCTGTTCAGGACAAGCCAGCAGAGGTCCAGTCCCAGCCTCAGTTCAGACGTGTTAAAAGCCCCTCACCCAACAGAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017015 True 595 lncRNA 0.53 4 23999569 24005283

Neighbor

gene id symbol gene type direction distance location
XLOC_008503 si:ch1073-145m9.1 coding upstream 81086 23911655 ~ 23918483 (+)
XLOC_008502 si:ch211-167j9.4 coding upstream 198070 23799461 ~ 23801499 (+)
XLOC_008501 ift20 coding upstream 209397 23784842 ~ 23790172 (+)
XLOC_008500 sae1 coding upstream 260465 23722620 ~ 23739104 (+)
XLOC_008499 klc3 coding upstream 322123 23657051 ~ 23677446 (+)
XLOC_008506 NA coding downstream 127271 24132554 ~ 24132837 (+)
XLOC_008507 NA coding downstream 144685 24149968 ~ 24162100 (+)
XLOC_008508 NA coding downstream 174649 24179932 ~ 24205981 (+)
XLOC_008509 NA coding downstream 186427 24191710 ~ 24198497 (+)
XLOC_008510 sez6b coding downstream 207564 24212847 ~ 24544680 (+)
XLOC_008463 BX663520.1 misc upstream 2747287 21252191 ~ 21252282 (+)
XLOC_008496 NA non-coding upstream 493912 23467984 ~ 23505657 (+)
XLOC_008494 CR847979.1 non-coding upstream 621381 23378071 ~ 23378188 (+)
XLOC_008492 NA non-coding upstream 731192 23266658 ~ 23268377 (+)
XLOC_008490 NA non-coding upstream 792105 23207159 ~ 23207464 (+)
XLOC_008488 NA non-coding upstream 1438432 22541344 ~ 22561137 (+)
XLOC_008511 NA non-coding downstream 307273 24312556 ~ 24313122 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G285090 NA non-coding CI01000072 null 2983837 ~ 2992339 (+)
eurasian perch (Perca fluviatilis) G237726 LOC101484247 unknown NW_024375613.1 VHII01000026.1 645035 ~ 645620 (-)