G138017


Basic Information

Item Value
gene id G138017
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 17146482 ~ 17147927 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU156765
CTGTTTGATTTCAGGAGAGTACAGCTGGGCTTGCTCCTTCATTCTCTCATATTTTCCTGCATTGTCACTCTTGACTTTCTCAACGTCCAGTAGCAGGGCCCAGGCCTGTCCTCTCAGCTGTAGTGGGATGCCTTTATACACCCTCTTAATCATCCTGTCGCTGTTTCTGTACTTGCTCCAGTTCTTCAGCATCTTCAGCCATTTCTGAACCCTCTCAATCTCCACCTGTTTTTGCTGCACAGGAGAAAACAATGAGATCTTATGAAGAAAGATTTGCAAATTCAAAAATTAGATATAATAAATGTTTAATTTCTGTTTAATTATCATTATTTTTCAACAAAAAATAAACATACACCAATCAACAAAAGCAAAAACATCAATAATAATAATAATAATAATAATTGATAATAATGATAAACATTTTTCAATATATCATACTTTATTTCAGCCTGTCCTATTTATTAACAATTGAGAATTCATTAGGTTCAGGTTATGTATAATATCAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU156765 True 508 lncRNA 0.33 3 17146482 17147927

Neighbor

gene id symbol gene type direction distance location
CI01000026_17021405_17034147 MFGE8A coding downstream 112335 17020517 ~ 17034147 (-)
CI01000026_16988458_16994714 TRAF6 coding downstream 151378 16987816 ~ 16995104 (-)
CI01000026_16959659_16962519 CDKN1CA coding downstream 183261 16959273 ~ 16963221 (-)
CI01000026_16817010_16832208 SIN3AB coding downstream 314274 16816295 ~ 16832208 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 coding downstream 386221 16756729 ~ 16761341 (-)
G137994 NA non-coding downstream 40927 17105200 ~ 17105555 (-)
G137979 NA non-coding downstream 62263 17084025 ~ 17084219 (-)
G137966 NA non-coding downstream 78963 17067015 ~ 17067519 (-)
G137962 NA non-coding downstream 86410 17059869 ~ 17060072 (-)
G137959 NA non-coding downstream 97265 17049014 ~ 17049217 (-)
G137967 NA other downstream 77049 17068348 ~ 17069433 (-)
G137914 NA other downstream 162130 16983251 ~ 16984352 (-)
G137667 NA other downstream 338110 16806364 ~ 16808372 (-)
G136110 NA other downstream 2591046 14554917 ~ 14555436 (-)

Expression


Co-expression Network