CI01000027_00137910_00141799


Basic Information

Item Value
gene id CI01000027_00137910_00141799
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 137292 ~ 144599 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00137910_00141799.mRNA
AAAGCGTTTTACAATCACATCAGTATGCATTACGTAGGTTTTCAGCTCAAGTTGCTCAAGTTTCTCGTCTCAAGCTGAGTTCCAGCGAAGGCCTCAGTTACTGAATCTCACACAGTCTGGGATAATGGTCTATTTTCCCTCATGTGCGTGTGCCAGGGAAGGAGGTTATAATATCCCTTCCAGATGTGCTGGAGCTCCTGTGCACCAATAGCAGAGGGTCTCAAGGAATTTTCATTGCGCAACCGGAACGTATGACGATGACGTTACAAGGAATGGCTGCAACTTCCTATAACAGAGTCGATGCATTATAGTCTGTTGGACTGATAGAGCTTCTGAGGAAAACTTCTGTGAATATGGTCATTGTGCATCAGTGAAAAACATGTTTATGTGGAAAATCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATACATATATTATATACTGCATTTACAAACTTTTGTTAGATGCAATTAATTGATTTGACAGCACTTATATATATATATATATATATATAATCGCATCTAATGTAAAAGTTTGTGTATGTGTGTATATATATACATATGCATATATTATATACTGTATTTACAAACTTATGTTAGTTGCAATTAATATATATATATATAATTGCATCTTACATAAATGTTTGTGTGTGTATATATATATATATTATACTGTATTTACAAACTTTGCTGTCAATTCGATTAATTGCATCTAACAAAAGTTTGTGTGTGTGTATATAATTTCTATTAATTTTTATTTCAGTTTTAGTTTGTTTTAGTGCATCAAGTAGCTGCAGCAACTAACTGAAATAAAAAAAAAGTTTGTTTTTCATATTTTATATTTGTATTTTATTTATAGCATTTATGTTATTTCAAGTAGCAAAATGCTTTTTGTGGTTTTAGTTTTGCTTAACTATAATAACCGTAATTTATAATAATAATAAAATAAAATAAACAACAAAAAAAGGTAATAATAGTAATACTAAAAATAAAAATGATGACAATAACAATAAAAATTCAGAGTTATAATGAAATTTTTGCATGGTTGGAGCATTATCGCTCAGATCTTGTTTTTCAAAACTGTATGGAGTGTTTTACTGAAGCATCATATTTTTTTATAATGCTTTAGGAGAAATACAAATGATCAAGATCTCAGTTATGAGTGTGTTTCCCGGTGGGTGGAGGTAGAAAACTCCTAAATTCTCTAGCGAGCAGAAACACGCTTTTTTTACACACGACCATATATGGAGAAGCTTCCTCTTCTTTGTTTTTTTTTTTCATAAAACGAAACTAAGCTTGAAATGTGAGATGGGCGGGCCGAGAAACACATTATAACCAGGCTGCTCGTGAACAGAGTGAACAGAATCAAAGCACAGCAGATACTAGACAGACCATTAAACATGAGGCCAATGCAGGAGAGCATTAAGATCTTGTACTTTGCTAATGGATCCGAGGAGCCGTTTGTGGAGATCGTCACTGTCAATCAGCAGAAGCGTCGTCCGAGTGTTTGCAGCTCTGCCGACTCTGAATCCGAGGACCTGCAGCCAGTTTTAGTAGATCGCAGTCAGATCCTGAAAGAACACCATCTCGAACAACTGATGAACCACATTCCGGCTCGGACTCAAGGTTATCCGTGGAAGCTGGTGTACAGCACGGCGGAGCACGGCACCAGTCTGAGAACACTGTACCGGCAGATGGCAGAAATAGACAGACCCGTCCTGATGGTCATCAAGGATTCAGACAATCAGGTGTTCGGAGCGTTTTCCTCTGACCCTTTCAAAGTGAGCAGCTACTGCTACGGGACGGGAGAGACGTTCCTCTACAGCTTCAGTCCAGAGTTTCAGATCTTCCGCTGGAGTGGAGAAAACTCCTACTTCGTGAGAGGATTCCTGGACTCTCTTCAGATGGGAGGAGGAGGGGGTCCGTTCGGATTGTGGCTGGACGCTGACCTGTATCGCGGCTCCAGTTACTCCTGCGACACCTTCTGCAACCGGCCGCTCAGCCTCCATCACGACTTCACCATTCAGGATCTGGAGGTCTGGACCTTCATCTGAGCAGAAATCCGCTGCTGTTTCCCGGCTGTATTGGTGTTATCACTGCTGTTTCATCTGAACAAACAACCGATGAGTTTGTTCCAGCAATGAAACCTGCAGAACTTGTCTGTTGACTCGAACAGAACGTCTTCCTCACTTGCATGTGGTTTTAGATAAAAGATTCTGCTATGAAATAACAACAATGTAAATGTGGTTAAAGGAAACAAGTTGAGGCAGGATTTGGGTTTTCAGTTCCCATTTCCAGTAACCTTTAACTGTTGAAGAGGCCTGATGGGACCTGAACGGCATTGCTCAAGATGCAAAGCCTCAAGCGCACATGTTCCAGACTATGTAGGCAACATACTGTAGCACACTAGTGTTGAAACGAAGCCTGTGAGTACTACTGACATAAGGCTTTAGTGTCTTTACTTTAAAATGCACTTACTGGTTTATGTGACCGACTACTACATGAAAAAGGATTTGAAAAGGAAAAATGTTTTGCTGTATGATTGTGATTTTACTACGTTATTTTTTTACTGTATTTAAAGAACTTTGTGATCACTGAATTGTGTTTTGGGATTTTGATTGTGTTTATTGTGCAGTGCTGGCACTGCATTTGGGTTTTGGATATCTAATAAA
>TU158045
ATTAGCCTTCAGCACATCGACATCTTCTTCATCATCCGTCTGCGCTCTTCAGATCATCATGGGTGTGGCGTACAGCGTGGGAGAGTGAGTAAACAGATTTTGAATTCACCTCCGTTGCTGCATTTGAATCGTGAAGAACCTTCAACATCCATGCACTCTTACAAATAAATGCCATAGAAGAACCATTTTTGGTTCTCCAAAGAAATTTTTAAAATCTGAAGCGTTTTCAACAAGAAGTGGAAAGGTTCTATGGATGGTGAAGGTTCTGGTGACTTGATCCTGTTTACACCTGGTATTAAGATGCATTCTGGTCGATCGGATCACAAGTAGACGAGGGAGACGCATTCCCATTTACACCTGGTGTTTTAATCTGTCTCTTTAGTCCACTTTCGTCCACTTCTGTCTTGATTTCTACGATTCAGCTACCTCAGAAAGTGGTCAAAAGTGGAAAAGCTTGAAACAATTTATACCCCATTTCCCTGGTAAAATTCACATTCCAGGGGCTAAATATCATGTTATTTGAGGTCGCTTCAACCCGCGGACATGAAAAACAACCCACGGCAACAGTGTTAAAGTAGCCCAATTCCACGGGAAAACCACGGACTTGGTAACACTGGCGATAATGTAAAAGTAGGCGTTGTTGTTTTCCTCCAGAGGCAGTCATATGCAAATGATTGTGCCCCTGTGACGTCACATGACACCTCTGTTCCAAACAAAGCTTTTTTACAGCTTGATTATATAAATGCTTTTTTATTGATGACGAGGATGTTTTAAGTTATGGAACTTGCAGGATGTAATAATGATACAAAGACCTGTTATATGCCAAAAATTTGATTTCTCATGTCATGACCCCTTTAATACCAGGCGTAAACAGGGCCAAAACATAAATGTAACTAGAATATTATTAGACTTAATATCTGCTAACACTTTATTTTGATGTCGCTGCGAAAAACCCCTTTTAGAATCTTTATTTTTGAGGAATTTAAGGAAGTGGAATTCAAGTGGAATTTGATGCATGCAACTGTACTGTGTAGTTTTTAATAATACATTTTGTGTTTTGTATGAATTACCTATTTAAAAAAAAACAAAAAACATACATATGACCCATAAATGACATTTAATCGAATTTTGCATTACATTTAATAAATAAAACTCAGTTTCATTCAGTTCAAATTCAAGGAAAACCTGTCCTTAAATTCTGAATGTTGCCAAATCTTGAGAAATATTTTCTTATTTTAAAATCTTTCCATTTGCACTAGAAAAGGCAAGAATGAATGGATGAAGCATTTATATAGCGCTTTTATTCCATATATTGTACACCCAAAGCGTTTTACAATCACATCAGTATGCATTACGTAGGTTTTCAGCTCAAGTTGCTCAAGTTTCTCGTCTCAAGCTGAGTTCCAGCGAAGGCCTCAGTTACTGAATCTCACACAGTCTGGGATAATGGTCTATTTTCCCTCATGTGCGTGTGCCAGGGAAGGAGGTTATAATATCCCTTCCAGATGTGCTGGAGCTCCTGTGCACCAATAGCAGAGGGTCTCAAGGAATTTTCATTGCGCAACCGGAACGTATGACGATGACGTTACAAGGAATGGCTGCAACTTCCTATAACAGAGTCGATGCATTATAGTCTGTTGGACTGATAGAGCTTCTGAGGAAAACTTCTGTGAATATGGTCATTGTGCATCAGTGAAAAACATGTTTATGTGGAAAATCTCTNNNNNNNNNTTCATGTGAAATCACAGTTCTCTCCAGAGCTGCTTATAGATGAATTGAACTCGTTTCATAACTGATGAACTTCACACAGTTATTAAACTGAACTGAATCGATCTGATTATCTTCTGCAGAATTGATTGAAGCTGCTTTGAAACATTCTGTACTGCATAAAGCGCTCTAGAAATAAAGCTGACCCATCCTGTTGTTTTAAACCCTCAGGTGTTCGGAGCGTTTTCCTCTGACCCTTTCAAAGTGAGCAGCTACTGCTACGGGACGGGAGAGACGTTCCTCTACAGCTTCAGTCCAGAGTTTCAGATCTTCCGCTGGAGTGGAGAAAACTCCTACTTCGTGAGAGGATTCCTGGACTCTCTTCAGATGGGAGGAGGAGGGGGTCCGTTCGGATTGTGGCTGGACGCTGACCTGTATCGCGGCTCCAGTTACTCCTGCGACACCTTCTGCAACCGGCCGCTCAGCCTCCATCACGACTTCACCATTCAGGATCTGGAGGTCTGGACCTTCATCTGAGCAGAAATCCGCTGCTGTTTCCCGGCTGTATTGGTGTTATCACTGCTGTTTCATCTGAACAAACAACCGATGAGTTTGTTCCAGCAATGAAACCTGCAGAACTTGTCTGTTGACTCGAACAGAACGTCTTCCTCACTTGCATGTGGTTTTAGATAAAAGATTCTGCTATGAAATAACAACAATGTAAATGTGGTTAAAGGAAACAAGTTGAGGCAGGATTTGGGTTTTCAGTTCCCATTTCCAGTAACCTTTAACTGTTGAAGAGGCCTGATGGGACCTGAACGGCATTGCTCAAGATGCAAAGCCTCAAGCGCACATGTTCCAGACTATGTAGGCAACATACTGTAGCACACTAGTGTTGAAACGAAGCCTGTGAGTACTACTGACATAAGGCTTTAGTGTCTTTACTTTAAAATGCACTTACTGGTTTATGTGACCGACTACTACATGAAAAAGGATTTGAAAAGGAAAAATGTTTTGCTGTATGAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00137910_00141799.mRNA False 2750 mRNA 0.37 6 137292 143277
TU158045 True 2733 lncRNA 0.41 4 137421 144599

Neighbor

gene id symbol gene type direction distance location
CI01000027_00131884_00132650 NA coding downstream 4642 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA coding downstream 18884 108119 ~ 118408 (-)
CI01000027_00078634_00087807 TAP1 coding downstream 48573 78492 ~ 88719 (-)
CI01000027_00060015_00076918 BRD2B, BRD2A, BRD2 coding downstream 60264 60015 ~ 77028 (-)
CI01000027_00058562_00058846 NA coding downstream 78446 58562 ~ 58846 (-)
CI01000027_00178291_00179467 EXT1B, EXT1A, EXT1, EXTL1 coding upstream 35014 178289 ~ 179471 (-)
CI01000027_00332200_00343377 NA coding upstream 188705 331982 ~ 344039 (-)
CI01000027_00645077_00650763 SLC25A32B, SLC25A32 coding upstream 501717 644241 ~ 651285 (-)
CI01000027_00701871_00719591 COL28A1B coding upstream 558489 701766 ~ 719591 (-)
CI01000027_00742700_00758723 COL28A1B coding upstream 599354 742631 ~ 758723 (-)
G139089 NA non-coding downstream 14787 121498 ~ 122505 (-)
G139111 NA non-coding downstream 55381 81630 ~ 81911 (-)
G139080 NA non-coding downstream 90740 39325 ~ 46552 (-)
G139138 NA non-coding upstream 2104 145381 ~ 145786 (-)
G139123 NA non-coding upstream 66455 209732 ~ 216101 (-)
G139154 NA non-coding upstream 95396 238673 ~ 239396 (-)
G139155 NA non-coding upstream 96163 239440 ~ 239676 (-)
G139117 NA other upstream 90935 234212 ~ 237579 (-)
CI01000027_01241417_01245177 NA other upstream 1101358 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 1158757 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1978853 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 2083348 2225781 ~ 2227499 (-)

Expression


Co-expression Network