XLOC_008509


Basic Information

Item Value
gene id XLOC_008509
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24191710 ~ 24198497 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018777
tatatttatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatgttacatGCCTGGGGGTGTTGCTCTGTTGTTCCCTCCTCCCCTCTCTGTTTCTATTTGCTGTCTCCTATACTTCTAAAATCTAGGTGTTACATGCCTGGGGGTGTTGCTCTGTTGTTCCCTCCTCCCCTCTCTGTTTCTATTTGCTGTCTCCTATACTTCTAAAATCTAGGTGTTCCGATTGGTTGGCAGAGTTCTCccgagtggaccaatcagaagagtaTGGGTGTTATTTAAACGCTCCAGTGATGACTCAGCCCAGATGAGAGGGGGATCCATGTTGCTTGTTGCTGCTGTGTTTTTGTAACTTTTGGTACCTATCTTGTGCTCGGGTTCGCTTTAAAgagtttttgtgatttaaaaataccTAGAGGGAAGTGAAGGGaagtatgtcacgtgacttacattttacacacacgtagtagattttttttgttattccacTAGGTAAGAGGCGGGTGCTACCATATGTATGTTTGTTCCAGTCAGTGCAGTTGAGTAAGGGGCGTGTGAcgctgaagatgttttttttcttatttacatatttctctTTAGTTATTTAGAGGTGGGGGAGGGATTAGTTAGCgggtgtttaatttgttattttctttgatttggcaccgCTTATTCTCCTTCCCTCCATCaggtatttttgtttactttttgcatttgcattttgttttattgtacatatttgtaaatatactttggGTGATTTAAATATTCACTTCTTTATCTTTATTGTAATAAAGCGAACCAGTTTTTTTGCAACGTCGTTGTCTGTGTTGATTCATAGCAGTTAACATCTCAGAGGAATTCTTAAAATATTGGGTTGTCATAATTATGTTAAGCCCTTTTTCATCCTCCGAGCCACACGGGgcgtaacaatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttctgtgtatattttgtatatatgattacacacataaaaacatttcagaaaatgtttgttttttatttagatatta

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018777 True 1087 lncRNA 0.37 2 24191710 24198497

Neighbor

gene id symbol gene type direction distance location
XLOC_008507 NA coding upstream 29610 24149968 ~ 24162100 (+)
XLOC_008506 NA coding upstream 58873 24132554 ~ 24132837 (+)
XLOC_008504 myo18ab coding upstream 70789 23947932 ~ 24120921 (+)
XLOC_008505 NA coding upstream 186427 23999569 ~ 24005283 (+)
XLOC_008503 si:ch1073-145m9.1 coding upstream 273227 23911655 ~ 23918483 (+)
XLOC_008510 sez6b coding downstream 14350 24212847 ~ 24544680 (+)
XLOC_008511 NA coding downstream 114059 24312556 ~ 24313122 (+)
XLOC_008512 phf12b coding downstream 350557 24549054 ~ 24563042 (+)
XLOC_008513 dhrs13b.1 coding downstream 365007 24563504 ~ 24569062 (+)
XLOC_008514 dhrs13b.1 coding downstream 374429 24572926 ~ 24601091 (+)
XLOC_008463 BX663520.1 misc upstream 2939428 21252191 ~ 21252282 (+)
XLOC_008496 NA non-coding upstream 686053 23467984 ~ 23505657 (+)
XLOC_008494 CR847979.1 non-coding upstream 813522 23378071 ~ 23378188 (+)
XLOC_008515 NA non-coding downstream 418073 24616570 ~ 24618644 (+)
XLOC_008522 NA non-coding downstream 642794 24841291 ~ 24844913 (+)
XLOC_008523 CR942805.1 non-coding downstream 763639 24962136 ~ 24962252 (+)
XLOC_008524 NA non-coding downstream 809058 25007555 ~ 25053314 (+)

Expression


Co-expression Network