CI01000027_00229612_00237058 (RAD21A, RAD21B, RAD21)


Basic Information

Item Value
gene id CI01000027_00229612_00237058
gene name RAD21A, RAD21B, RAD21
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 229005 ~ 237759 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00229612_00237058.mRNA
ATATAAATACAATCGCTTTGTAATTTTTAATCGTTATATGTGACCAAGAAAAATAAATTATATCATTTGTAATTTTAAAGGCGATTTATGTATGGGTTATTTTAAAGCTAAGTAGCTCAGCTTGCTAATCAACAACTTAGCCAAACGCTTGTGTGGAAATTTACGCAACTGTTTTGCATCGTTAATAAATGCATTTTTCTATATTTTCCGTCTATTAGAGCTTTTTGGAATATTTGAATGGGATTATGCGGCGTTTTGGAGCAGTGGAGTTGTGTTTTAGCTCGCTTTCTTCAGGTTTTAATGTTGGTGTAAAGGCGGGCAATGCTTTAAATGCTATTTATGTAATCTAATCAATAACTTAGACTAAGTGTGCAATACTTACAACAAGTATAAACCTGTATTTTTATTGTCTTGCCTAAGATTTTTTTTCACTGGCTGGTTGTAGATTACTCTGAATTAGAAATTCTGGTTACCTTTACATAACATTTGTTGCATGTTCACTTCCATGGGTTTTGAGACTTTATTGTAGTCTGATTTTGAATGAGTACTCTTGTCTCCTTCCAGGTGTAGCAGAAAGCTCTCAGAGCTTTGACCAGACACCAGGGCAATGTTTTACGCCCACTTCGTCCTCAGTAAACGTGGGCCGCTGGCCAAGATCTGGCTGGCGGCCCATTGGGACAAAAAACTGACCAAAGCACACGTCTTTGAATGCAACCTGGAAAGCAGCGTGGAAAGCATCATTTCACCAAAGGTGAAAATGGCTCTGCGTACATCTGGCCATCTTCTCCTGGGCGTGGTGAGGATCTACCACAGAAAAGCCAAATATCTTCTGGCTGATTGTAATGAAGCCTTCATCAAGATCAAAATGGCTTTCCGCCCAGGTGTCGTTGATCTGCCGGAAGACAACCGTGAGGCTGCATACAATGCCATCACTTTACCAGAGGAGTTCCACGATTTTGACCAGCCTCTTCCTGATCTGGATGATATAGATGTAGCGCAGCAGTTTACCCTGAACCAGAGTCGTGTTGAGGAGATCACCATGAGGGAGGAAGTAGGAAACATCAGCCTCATGCCCGACAATGACTTTGGTGACTTTGGCATGGATGATCGTGAGATGATGAGAGAGGAGAATGCTTTTGAGGTGGACATCATCCACGGATCCTCTGCCACCACCCTGCTTCTGGAAGCGGAACCTGGTCCCGCTCACCTCCCGGACAAACCCACTAACCTCGACTACGATGACTTTGGGGATAACCTGGAGAACAGCGATGGTGGAATTCTGATGGATAAGATTCTGAGCAATGAAGATGGTGGTGGTATATTTGATGACCCGCCAGCTATCACTGACAGCGTGATGATGCCTCAAGACCATGGCGACGATGAAGACGACTTTGATAATTTTTCTCCGCCTGGCGGTCCTGACAGTCCAGAATCTGGCCCAGTGGAGCCTCTTCCCAACACCACAGACCAGACAGAGCAGACCACTCTGGTGCCCAATGAAGACGAAGCTTTCGCTCTTGAGCCCATCGACATTACTGTGAAAGAAACCAAGGCTAAGAGAAAGAGGAAGCTCATCGTCGACAGCCTGAAGGAGTTGGACAGCAAGACTATCCGTGCCCAGTTGAGCGATTACTCCGATATCGTCACCACACTGGATTTGGCTCCTCCTACTAAGAAGCTGATGATGTGGAAGGAGACTGGAGGTGTGGAGAAGCTGTTCTCATTGCCTGCTCAGCCCCTCTGGAACGGACGTCTGCTGAAGATGTTTACTCGCTGCTTGACTCCACTGGTGCCTGATGACCTGAGGAAGAGGAGGAAGGGAGGGGAGGCCGACAGCCTGGAGGACTTCCTGAAGGAGCTGGAGAACCCAGAAGTGCCCAGAGAGGAGGCGCTGGGTCACAGGAGTGATGTGATTGATCAGACCATCATGGAGGAGCCCAGTATGCTGCAGGCGTCCTCTGTGGAGGGCAGCAGAACCGCTCTTGACGAGTCCATGATGCCGCCTCCGTCTCGCCAGCGTGGAGTGAAGCGCAAATCGCTTGAGAACGAAGCAGTGTTGCCTCAAATGGCAGTGTTGGATCAGACGCTTCAGCCCGTGGATCAGTCGGTCCTTTCCCATCAGCTCGACATGCCCCAGGTGGATCTTCCTCCTGAGGACATCAGCAACCTCTCTAGACTGGTGCCAGAGTTCGACCTGTTAGATGACAAGAACAAGGAGAAGGACAAGGACGACAGCGACGAAGAGGGCGAAGAGGGACAAGGAGGAGACCAGGACCAAGAGGAGAGAAGGTGGAACAAGAGAACTCAGCAGATGCTTCACGGCCTTCAGCGTGTGGTGGCTAAAACCGGAGCCCAGTCTATCAGCCTGCTCGAGCTGTGCAGAAACAACAACAAGAAACAGGCTGCGGCCAAGTTTTACAGCTTCCTGGTGCTGAAGAAACAGCAGGCCATCGAGCTGACGCAGACAGAGCCATACAGTGACATCGTCGCCACGCCTGGACCGCGGTTCCATATTGTATAGAAGCATACCCTCTATTTTTTTTTTTCTTTTTTTTGTTTTTATTAGTTGTATTTAACAATTTTGTTTTGCTACTGTTGCTTTTTGTATCTGTTTGTGTCCTTTGGGGCCAATTTAAAGGTTTTAAGTCAAACCCAATAGATCATGAAGACATTGTACCCTCATAGTAAGGTGTTATATGCTAGTGCATGTTGGACATCCATATTGTCAAACCATTGGGATCTTTCAGTTTCACTACTTGTTGTTTTCCCATCGTTCTGTTTTTATTTTCCTTCATAAGCTTTATCTCAGTAAGTTTTACATTTGTAGTAGAGTTAGTTAAGTGTACATTTTAACTTTTTAATAATGTCACAATTGAGAGACAAAGGTTTATTTTTGGAAACCCAAGTGGATTTAATGACACAACAGTTCAATGTTTTGTATCTCTCTTTTAATGGCAATTATGATTATTAAAGGTTTCTTAAACTCCTACATACAATTGGAATTTTTATGCACTTGTGATTAAATTTTGATATTGATTGAAAAAAATTCTCCTAAGTTCCTCTCATTTTACTGGTTTATTAATTAATGGATGTATGGTGCCATAATTTATATATTATATATTATACACACATTTTAAATGTGTATGCCTATATTTAATGAGTAAATGTTTAAATTTGTCTGAGAGTTGCCATCCTAAATTTCGTTGTACTGGTACAATGAGA

Function

symbol description
rad21a Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including chordate embryonic development; enteric nervous system development; and heart development. Predicted to be located in several cellular components, including chromosome, centromeric region; nuclear matrix; and spindle pole. Predicted to be part of nuclear meiotic cohesin complex and nuclear mitotic cohesin complex. Predicted to be active in synaptonemal complex. Is expressed in several structures, including brain; digestive system; head; optic cup; and ventricular zone. Used to study Cornelia de Lange syndrome. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 4. Orthologous to human RAD21 (RAD21 cohesin complex component).
rad21b Predicted to enable chromatin binding activity. Predicted to be involved in mitotic sister chromatid cohesion; replication-born double-strand break repair via sister chromatid exchange; and synaptonemal complex assembly. Predicted to act upstream of or within sister chromatid cohesion. Predicted to be located in nucleus. Predicted to be part of nuclear meiotic cohesin complex and nuclear mitotic cohesin complex. Predicted to be active in synaptonemal complex. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 4. Orthologous to human RAD21 (RAD21 cohesin complex component).
rad21 Predicted to enable chromatin binding activity. Involved in positive regulation of sister chromatid cohesion; protein localization to chromatin; and regulation of transcription by RNA polymerase II. Located in nuclear matrix and nucleoplasm. Part of cohesin complex. Implicated in Cornelia de Lange syndrome 4.

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00229612_00237058.mRNA True 3222 mRNA 0.44 13 229005 237759

Neighbor

gene id symbol gene type direction distance location
CI01000027_00122108_00124986 NA coding upstream 104019 122024 ~ 124986 (+)
CI01000027_00089337_00092919 NA coding upstream 135920 88779 ~ 93085 (+)
CI01000027_00000579_00037786 NA coding upstream 191153 579 ~ 37852 (+)
CI01000027_00238851_00240657 NA coding downstream 1092 238851 ~ 240991 (+)
CI01000027_00250077_00273130 EIF3H coding downstream 11997 249756 ~ 273130 (+)
CI01000027_00365674_00371897 CSMD3 coding downstream 127231 364990 ~ 371996 (+)
CI01000027_00391159_00499309 CSMD3 coding downstream 152924 390683 ~ 499760 (+)
CI01000027_00505199_00523652 NA coding downstream 266511 504270 ~ 523652 (+)
G138107 NA non-coding upstream 10375 218387 ~ 218630 (+)
G138106 NA non-coding upstream 10661 218123 ~ 218344 (+)
G138104 NA non-coding upstream 12005 216288 ~ 217000 (+)
G138094 NA non-coding upstream 31291 196777 ~ 197714 (+)
G138093 NA non-coding upstream 37576 191180 ~ 191429 (+)
G138114 NA non-coding downstream 6257 244016 ~ 245308 (+)
G138115 NA non-coding downstream 8124 245883 ~ 247582 (+)
G138155 NA non-coding downstream 405862 643621 ~ 645451 (+)
CI01000027_00681087_00701456 NA non-coding downstream 412430 681087 ~ 701956 (+)
G138030 NA other upstream 128748 39146 ~ 100257 (+)
G138238 NA other downstream 592015 829774 ~ 831683 (+)
G138247 NA other downstream 617629 855388 ~ 893121 (+)
G138290 NA other downstream 758211 995970 ~ 999181 (+)
G138436 NA other downstream 1269202 1506961 ~ 1507816 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location