CI01000027_00238851_00240657


Basic Information

Item Value
gene id CI01000027_00238851_00240657
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 238851 ~ 240991 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00238851_00240657.mRNA
GAAGTGGTCGGATCATTCCGGAAGAACTTTTTTACACGTGCTGTGGCCCGTTTCCTCTTCATCTGAAAATGGCCAGCCGTAAAGAATCAGCCGCTTCGGCGTCCAGTCCGCTGGATTCCCCGGTGAAACAGATCCAGATCGACGGGCTGGTGGCGTACAGTATTTCCTGCAGTTGTTTCTCCAAATCATTCAGCACTATTAGCTTGCGTTTCTTTATACGGACCAGTGATTTCCGTCAGATAAAAGCTGAAGTTTGTCGTTTAGCATTTGGACTAAACCCTCCAGTTATCATCACAGTAATTCATCCGGACGCTGCTGTTCATCTGAAGTGTTTGCTTAATTACAGAGCTGGTCTGTGTGTGTGGATGATGCAGCGCTGGTGTGGAAATGCATTGCATTCTACATCACTGCCAAAAGAGGGCGAAGTCGACTCAAGAAAAAACACTTCTTGTCATTATCTGGTTGTAGTTACTGCATTTTAGACGTTGGTTGACCTTCATAGGACAGTACTTTCATCTTTCTAATTAGCATTTATTTTTTCATCCTAAAGTTTGAATTGTGTCTTAGTATTGCTCCTTCCGTGAGCACAAAAGAAGATATTAGAAAGACTGCTACAGCTGCTCGTTTACATTTAATAAGCCATGTTCTCTAAAAAGACCAAAAAAGAGGTGCATGTATTTGATCTATTCTGCTGTATTTGAAGTCTTCTGAAGATATGGAATCCCTCTGTGAGGGAACAGACTGAAATTCATTATCCAAATTGCTCTTTTTCAATCTCAACCAGAGTTCTCAAATCTAATATTTGCGCTTGTTAAA
>TU156837
GAACTTTTTTACACGTGCTGTGGCCCGTTTCCTCTTCATCTGAAAATGGCCAGCCGTAAAGAATCAGCCGCTTCGGCGTCCAGTCCGCTGGATTCCCCGGTGAAACAGATCCAGATCGACGGGCTGGTGAGTGATTGTTCTGAAGCAGAAAGCGGCGGTTTGTTATTAGAGGCTCGAGTGTGTGTGTGTGTGTTCGGCTGGAGGTGGGTAGGGGGAGCTCAGCGTTCATCAGGAACAGCACTGGGGGAAAAAAATTGTGTTTTGTGGTATTTTGTGGACATGTACTATGGTACTACCAGGGTTTTCAACATGGTACTACCCGAAATATATAGTGGTTGTACCTGCTACCGTCACTATACCATGGTAGTTTGAGATATACCGTGGTACAAAAGTTAATATGGTATCTCTGGCCTTACTAAAAGTACTATGGGTGCTTTATAGTACACGAGTTTCAGTACCATGGTATATTTCAAAATATACATCTCTTATACTTTACATTTTGATATTTTTGTCTTTGTAAATGATGACCATACTACTGTTGAAAAGAGTTTGTGAGATATTATATTAGCCTATATTATTTTATTATAAGTCTGTTTTTATTTAAAACAACACAACATACAATTAACTTCCCTCCCCTACACACACACACACACACACACACACACACACACACATTGATTCTGTTCTTTTATTTTAAAAATAATTCTCTTTTTATTAACAACACAAAATACAATTACAACTTTCCCTCCCCAACACATAATATATTTTTACTTTATCTTATTAATTTTTATATATATCATACCATCATTCAAAAGTTTGGTGTTTGTTTGTAATTTTTTTTCCCCCTCGAAGTCTGGTGCAAATTAATAAATATTTCAGAAGTTTTTCATAAGTTTGGGGTCGGTAAGATTAAAAATTGTAAATATTTCACAGTAAAAAATGTGAACTATTATAACGTAAATCAGCTGTTTTCTATGTGAATATATAGTAAAGTGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTGATATGATGATTTGCTGCTCAAGAAACATTTATGATTATTATCAGTGTTGAAAACAGTCATATTTTTGCAGAAACCGTGATATATTTTGTTTTACAGGATTCTTTGATGAATAGAAAGTTCAAAAGAACAGCATTTACTTAAAATAGAAATGTTTTGTGACTTATAATTGCTTGAAATGTTATGATTATGAATATGATCAGCACAACGACTTGAGCAATGTCTCTGACTTCTTCAGAATGATGATAACTTGCTATAACTAACATTAGTCAGAACTGCTATAACGTCTTTACAGTGGAGTTGTTGTTTAATGCTCTCTTCCAGCTTCCTTCATCTGTTTTCTCTGTTATTTCTGCCACTGCTGGCCTTGTTTTCTGCTTCATCTTCAGGTGGCGTACAGTATTTCCTGCAGTTGTTTCTCCAAATCATTCAGCACTATTAGCTTGCGTTTCTTTATACGGACCAGTGATTTCCGTCAGATAAAAGCTGAAGTTTGTCGTTTAGCATTTGGACTAAACCCTCCAGTTATCATCACAGTAATTCATCCGGACGCTGCTGTTCATCTGAAGTGTTTGCTTAATTACAGAGCTGGTCTGTGTGTGTGGATGATGCAGCGCTGGTGTGGAAATGCATTGCATTCTACATCACTGCCAAAAGAGGGCGAAGTCGACTCAAGAAAAAACACTTCTTGTCATTATCTGGTTGTAGTTACTGCATTTTAGACGTTGGTTGACCTTCATAGGACAGTACTTTCATCTTTCTAATTAGCATTTATTTTTTCATCCTAAAGTTTGAATTGTGTCTTAGTATTGCTCCTTCCGTGAGCACAAAAGAAGATATTAGAAAGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00238851_00240657.mRNA False 816 mRNA 0.41 2 238851 240991
TU156837 True 1912 lncRNA 0.36 1 238874 240785

Neighbor

gene id symbol gene type direction distance location
CI01000027_00229612_00237058 RAD21A, RAD21B, RAD21 coding upstream 1092 229005 ~ 237759 (+)
CI01000027_00122108_00124986 NA coding upstream 113865 122024 ~ 124986 (+)
CI01000027_00089337_00092919 NA coding upstream 145766 88779 ~ 93085 (+)
CI01000027_00000579_00037786 NA coding upstream 200999 579 ~ 37852 (+)
CI01000027_00250077_00273130 EIF3H coding downstream 8765 249756 ~ 273130 (+)
CI01000027_00365674_00371897 CSMD3 coding downstream 123999 364990 ~ 371996 (+)
CI01000027_00391159_00499309 CSMD3 coding downstream 149692 390683 ~ 499760 (+)
CI01000027_00505199_00523652 NA coding downstream 263279 504270 ~ 523652 (+)
CI01000027_00527282_00534071 NA coding downstream 285876 526867 ~ 535055 (+)
G138107 NA non-coding upstream 20221 218387 ~ 218630 (+)
G138106 NA non-coding upstream 20507 218123 ~ 218344 (+)
G138104 NA non-coding upstream 21851 216288 ~ 217000 (+)
G138094 NA non-coding upstream 41137 196777 ~ 197714 (+)
G138093 NA non-coding upstream 47422 191180 ~ 191429 (+)
G138114 NA non-coding downstream 3025 244016 ~ 245308 (+)
G138115 NA non-coding downstream 4892 245883 ~ 247582 (+)
G138155 NA non-coding downstream 402630 643621 ~ 645451 (+)
CI01000027_00681087_00701456 NA non-coding downstream 409198 681087 ~ 701956 (+)
G138207 NA non-coding downstream 432660 673651 ~ 718459 (+)
G138030 NA other upstream 138594 39146 ~ 100257 (+)
G138238 NA other downstream 588783 829774 ~ 831683 (+)
G138247 NA other downstream 614397 855388 ~ 893121 (+)
G138290 NA other downstream 754979 995970 ~ 999181 (+)
G138436 NA other downstream 1265970 1506961 ~ 1507816 (+)

Expression


Co-expression Network