CI01000027_00391159_00499309 (CSMD3)


Basic Information

Item Value
gene id CI01000027_00391159_00499309
gene name CSMD3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 390683 ~ 499760 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00391159_00499309.mRNA
GTATAAAAATGAGTATTGTTTGTATTTATAAAGCCGTCTTAAATGCCTTTTAGCAGTTGGACTGCTTGTCATGTTAACACGTATAATGATTCATTACTGTGGCTGTATTTTAAAACAGTGTGTATTTTGATGCAATGTCTTTTGCCTCATAGACTTCCTTTGCAAGTGCATTCCTGTACACATGCATTTGCTTGTTTCTCAAACTAAGGCACAAGTCAAATTATTTTCTGTGCAAATCTACAGCATGTCATGGATTCTGTCCATAGAACTTAAGTTGTATTGATCCCGTAACATTACTGGAACAGACAGGCTAGTGCTTCCACAGTCCTGTACCTGTCAATGCAGATCACCCAACAACATTCATTATGACGGAGAGGTGTCAAGTGGTGGAGGCTGTGAGTGGTTATGACAGGCCACATGCCATGCTTATGTCATGTTTATGTTTGTATTTATTGTAGAAGCTGTCATGTTAAGCGATGGCAGGTAAAACAGCACACTCTCCTGCTGTGCTTCATAAAGTGGATGTTTGTTGCAAAGGCCACCGCGGTGGATGTGAAGAACTACAAAGCAGTTCTTGTGGGAATCCTGGAGTTCCTGCCAAAGGAATCCTGAATGGAACAAGCTTCAATGTGGGAGACAGAATCCGGTACCACTGTGTGTCTGGATACACCCTGGACGGCCACGCACAGCTGACCTGTGTCACCAGCACGTCTAATGTAGCCGTGTGGGATTTTCCTATTCCCATCTGCAGAGCCAAATCACTCAAACCAGGGATGAATCTGTATTACACGTTTTCTGACCCCGGGCTTTTTAGCACATGCTTTTTCATCTTCAGGCAAGGGAAATTGATCTTCTTTGATGAGGATATCTCAGTCTGGAAGCTTGCCCCTTCTCGCCGCCCCCTCTGGATGTCATTAAAGCCAACTATATTGCCGCAGCCAGTTCCAAAACTGAGTACATCAAACCCATTTTCACAGAGTAGCTGTTTGTCTCAGAGCAATATCCCAACCATGAATGCTGAAATCCAGCATAAAAATGTAATGTATATAGTGGAAAGAACATTATCATTTCAAAGGCTTCTGAATTCAGGACCCACGGCTGCCAGTCGCAGTGCCTGCACCAAAGTTCATGCAGAAGCAGCTCTGCTGGAAATTTTTTTTGTCAACTCCATCAGTTTTTGTCAACACCGTCAGTATTTGTCAACTCCGTCATTATATGTCAACACCATCAGTTTTTTTCAACACCGTCAGTATTTGTCAACTCCGTCATTGTATCAACACCGTCAGTCAGCATTTGTCAACTCCATCGGTATTTGTCAACTCCGTCATTATGTGTCAACTCATTCAGTATTTGTCAGCTCCGTCAGTTTTTGTCAACTCCATCAGTTTTTGTCAACACCGTCAGTATTTGTCAACTCCGTCAGTTTTTGTCAACACCGCCAGTCAGCATTTGTCAACTCCATCAGTATTTGTCAGCTCCTTCATTATGTGTCAACACCGTCAGTATTTGTCAACTCCTTCAGTATTTGTCAACTCCGTCAGTTTTTATCAACACTGCCAGTCAGCATTTGTCAACTCCGTCATTGTGTCAACTCCCGGAGGACACGTGTGGTGGGACCTTCCGAGGGTCGAGTGGCAGCATCTCCAGTCCAGACTTTCAGAAGGACTATCAGAGCAGTGGTGAATGTACGTGGACCATCCTCGCTGATCCAGGAGACACCATCTCACTGGTCTTCACTGAATTCCAGATGGACAGCAAACTCGACTCTTTGGAAGTTGAGGGATCCGATCCACCAACAATATGTGAATGAAGGCATGGTCAAGCAGGTCTCCAATTTCTGCCCAGACCCCGGGGAACCGGAGAACGGCAAACGCATTGGCACCGATTACAGCATCGGTGCAACGGTTCGGTTCACGTGTGACGGGGATCACGTGCTTCAGGGATCCAAGAGCATCACGTGTCAGAGGGTGGCGGAGGTGTTTGCGGCCTGGAGCGACCACAGACCCGTCTGTAAAGTGAAAACATGTGGGATGAACCTCTTCGGTCCTTCAGGAACGTTTACATCGCCAAATTTCCCCATCCAATATGAGAGTAACTCACAGTGTGTTTGGATTATCACCGCCAGTAACCCCAATAAGGTTATTCAAATCAATTTTGAAGAGTTCGACTTAGAGCTTGGGTACGATACGCTGACTGTCGGAGACGGCGGAGAGCTTTGCAGCAGTTATTCGTTTCAACAGCATGAAAGCCACAAAACCATAAAAACTGCACAGGCACAAATCCTCCGGCTATATTTTTCCCCTCACAAACAAGTTTTTCCATCCAGCTCTTCTCCCATTCCCTGTATGTCCAACTTCACGGCTGCAATGGGAACCGTTCTGTCTCCGGACTATCCCGAGGGTTACGGCAACAACCTCAACTGCGTCTGGCTGATCATCGCCGAACCGGGCAGCCGCATCCATCTAGCCTTCAACGATTTCGACCTGGAGCCTCCCTACGACTTCCTGACGGTGAGGGACGGGGAGCTGGTGGACGCGGTGGTGCTGGGACGCTTCTCCGGTGCGGAAGTGCCGTCACACCTCACCAGCAACTCCAACATCCTCCAGCTGGAGTTCCAGGCCGACCACTCGATGTCCGGCCGAGGCTTCAACATCACGTACAGCAGCCATTTCACCGCTCCGGTGGGAGTCATTCTGTCCCCGGGGTGGCCCGGCTACTACAAAGATTCCCTGAGCTGCGAGTGGGTCATCGAGGCCGAGGCGGGACGCTCCATCAAGATAAGCTTTGACAGGTTCCAGACAGAACTCAATTATGACTTTCTAGAGGTTCACGATGGGCCTAATCTCCTCTCGCCCCTAATCGCCTCTCTAAATGGCACCCAAGTCCCTCAGTTCCTGTTCAGCAGCGGCAACTTCCTGTATCTTCTCTTCACCACCGATAACAGTCGCTCTAACAGTGGCTTTAAGCTCTTTTATGAAAGCGTCACTCTGGACACTCATTCATGTCTGGATCCTGGTGTGCCGGTAAACGGGGTTCGTTACGGGCAGGACTTGGCCATCGGCTCGGTGGTGTGGTTTGGCTGTGAGCCTGGATACAGACTGAGCCACGAGGAGCGTTTGGTCTGTGAGAAGAACCACTGGTGGAGCCACCCTCTGCCCACATGTGACGCTCTGTGCGGAGGCGATGTTCGGGGCCCAGAGGGCATCATCCTCTCTCCTGGCTTTCCCGAGCTCTATCCCAACTCATTAAACTGCACATGGACTCTGGAGGTCAGCCATGGCAAAGGTGTGCAGTTCACGTTTCATGCGTTTCACCTGGAGGATCACCATGACTATCTGCTCCTGACGGAGAACGGCAGCTTTGCACGACCCCTCGCCCGGCTCACCGGTTCGCAACGACCTCCGCCTGTCAACGCCGGGCTGTACGGAAACTTCAAGGCCCAGCTTCGCTTCATCTCCGACTTTTCCATTTCCTTCCAGGGTTTCAACATCTCTTTCTCAGAGTACGATTTGGAGCCATGTGAGGACCCCGGTGTGCCCCAGTTTGGCAGGCACAGCAGTGGCAGCTTTGGCATCGGCGACACCCTGGCGTTCTCATGTGACCTTGGTTACCGCCTGCAGGGTGCTCGAGAAATCACTTGCCTGGGCGGCGGGCGGCGCATATGGAGTGCACCTCTGCCAAGGTGTGTGGCTGAATGCGGCTCAACCGTTTCCAAGAATGCCGGTGTCCTGTTGTCCCCAAACTACCCCCGGAATTACGAGAACAACCACGAGTGCATCTACAACATTCAAGTACAGGCAGGAAAAGGAATCAACATATCGGCGAACAGCTTTCATCTGGCTCAAGGTGACGTTCTCAAGTTATACGATGGTCCGGACAACACGGCAGAAGTTCTGGGAGGTTTCTCGGGTTCCTCTATGCTGGGTCAGTCGTTGACCAGCACGTCGAATCACCTGTGGCTTGAGTTCTATTCTGATCAAGACGACACGGCCGAGGGATTTAAGCTGGTTTACAACACGGAGTGTGGGGGAAGTTTTAAAGGTGAGTCATCCGGACGGATACTGTCTCCCGGATACCCCTTTCCGTATGACAACAACCTCCGTTGCACATGGACCATCGAGGTGGACACCGGCAACACTGTCAGTCTGCAGTTCTTGGCTTTTGACACGGAAGCGTCACACGATATCCTGAAGGTCTGGGATGGACATCCGGAAAACGAGATGGCTCTGAGGGAAGTGAGCGGTTCGCTGTTACCGGACGGCATCCACAGCACTCTCAACATCGTCACCATCCAGTTTGAGACAGACTTCTACATTAGCAAATCTGGATTTGCCATCGACTTCTCAAGTTCAGTGGCGACCGCCTGCAGGGATCCGGGGACGCCCATGAACGGCAGCCGCAGCGGAGAGGGGAAGGAGCCGGGCGACACGGTGACCTTTGCGTGTGATCCCGGCTACGACCTGCAAGGCGAGCCCAGGATCACCTGCATTCAGGTGGACAACAGATTCTACTGGCAGCCCAGTCCTCCTACCTGCATCGCTCCTTGTGGTGGGAACATTACAGGCTCATCTGGATTCATTCTGTCACCTAATTTCCCCCACCCGTACCCGCACAGCAAAGACTGTGATTGGTTCATCACAGTTCATCCTGATTACGTCATCTCCTTGGCTTTTATCAGTTTTAGCATTGAGCCCAACTATGACTTCTTGTACATCTACGACGGACCTCACAGCAACAGTCATCTGATTGGCACATTTCAAGACAGCAAGTTGCCGGAGAAGGTTGAAAGCAGCTCCAACATCATGCACATTGGCTTCCGCAGCGACGGATCCGTGAGCTACACCGGCTTCCATCTGGAATACAAAGCTTTATCATACGCCATATGTCTTGTGTTCCTCTCCCGTATAGCTAAACTGCGTGAGGCTTGTTTTGACCCGGGCAGCGTGATGAACGGCACACGGTTGGGTGTAGACTATAAGCTGGGCTCCACTGTGACCTTCCACTGTGATCCAGGCTACCAGCTCCAGGGTTATTCCAGTCTCACCTGTGTCATGGGCGGCACCAACAGACCCGAGTGGAACAGAGCTCTGCCCAGCTGCCAAGCTCCATGTGGAAGTCGGTCGACGGGGTCAGAGGGCACCGTTCTGTCTCCAAACTACCCTCGCAACTACACCGAGGGCCAGACCTGCGTGTACGAGATCTCAGTGCCAGGAGAGTTCGTACGGCAGAAAATCTGTTCCCGTTGTACCGGAGTCCCTCAGCATTTTCAGCGTATGAGAAATCTTGGCAGCGTCGTGAGAGCTGCTGCATTAGGGACTCTATTAGATTTATGTAAACTGCAGCAGACAGCTTCGTGTTTCACGCAGGGCTCGGGTCTTTTTATGCCAATCACAATGACTTCGATGTATAGTTGCATTGCTCACGCTAATCCCAACTTGCTCCCTGTCAACATTCCAAATTCACACCCCCTTAAACTGGTGGCAGATTTTCCGGAGAGCGTGAGTGCAAAAATCTCACCCCGAGGACACGTGGCTCTTCCCGGTACGGGGGTTGTGTGCACGGGTGTAAGGACGTGCCCGCGGGCCAATGTCGCATCAAACACCGCTGAATGACTGCAGACACCCACGTGTGTAGCTGTGGATTCAACAAACACTTGTACACACAATCACACATTTCCATCTCTGAGTGGAGACGTCTGCTGTACACGCTTGTTCCACCTTTGCACTCTTCGACTCAAACCAAACTACTGGCTAATGCAATTAACATGAAAGCCAGTGTTGAAGAAGCGAGCTCTGAACGCATTATCAAAGGCACTTATTGTGCTTTTTTTTTGTTTTAGCTTTTCTTTACTGTGTAATATAGCTGTTTGTGCATGTAACCTGCAAAGTTATGAAACAAAAATGGTGCGTTCAGGATCGTATTAGGGAAATAGGGAATATGGGAGTAGGGAAACTAGCTTTCTTTACGCCACTTGTTTCAGAGTTGGGGGAGGGTCAGAAAATATATGGGGGATTCAATAACTGCAAGAAAATATGAGGGAGTTTCAGAAAATATGGGGATGCA
>TU156938
GTTTTAACCCAGCTATTGGGTAGTTTTACTGAGCGATTGGGTTGTTTTAGCCCAGCGATTGGGTAGTTTTAACTCAGCTATTGGGTAGTTTTAACCATTTCTAGTCATTTTTAAATAGTTGGGTTAAATAAAACTACCCAGCACATTGGGCAAACATTTAACCCAATCGCTGTGTTTGTCCATTTTCAACCCAATTTGGGTTGTTTTTAACCCAACATTTTTTAGAGTGTAGCATATTAGAAAGGTTATGCTATTAGGGTTAAGGCCTTTACACACTGAGTCCGAAATTCGCATGCGAAACTTTCGCACGTAAAAAAATAAATTCGACCTCACGTTGTGTCAATCACGTTTGCACACTGGCCCGAAACTTTCGTCCGTCATAAAAATATTCAGATCAGGTTCGATTTTCTGCGTTTTTCACATCCGCGGCACGCATTTTGAGAGACGTTTTGACAATTCAGAGCCACCGTACGCGAACGCCAAAATCCAGAATGCCATCTGACAAGTTGATCCACGTCGTCTACAGCACAGAGCAGCAGCACTGAATGACAAACAACATGCGGAAAGAGACAGAATATAAAGACAGATTGTGCCAGTAGCAAAGCATCAAACTGAGCCACTGACATCCTGAAGTAAACTTTGAAACACTCGGGATAATCCCGCAGCTCCTTGATGAGGTGAACTCTCTTTTCTCTCTATGCAATCTCGGGATTGGATGGACCCAATATTTCCTCTTTCTTTTTCTCTTTTTAAGAAGAGAAAGGACAACTAAATCATGCTCACTGCTTGAAGACTTCATTTTGTATTGTTTTGCGATTTTTTATTTTTTATGTTTTATTTTTTGCAACGGATTCATTAATACACATCAGACTCAGTGTGCAAGGTCTCTGTGCGTGACAAATTTTTATGATTACGAATACGAAAAAACACATGCAAAAATTTTGGACTCAGTGTGCAAAGGCCTTTAGGGTATATTTTGTTTTAGGGTTAGTTGCATGTAATTATGCATAATTTATAGTTATTACTAAAGTAACTATATGTGACATATGTAACAATGACTCTGTAAAATAAAGTGTTACCAAATATCTTTTTGACCCCAAACTTTTGAATGGTACTGTTATAGGAATGGCTTATTGACCAAAATCTTGTTTTATACAGTATCCAGATTTCTATAAACACAATTTTGTTCATGTGGCAAATTACAACATTTTTTTGGGGTGAGAATCGTGTTTGTCAACCATAAACAAGCAATATTTATCCAGCTCTTAAAATACCATGATTCTAGTTCCAAAAAAAACCCAAGATTTCTTTTTGGTATATTTTATTGTGTAACGTATTATTTCTGCTCGTTCAAGCAGAAGCCGAGAAGCTTTAAGATCCTCTCTCTAGGTCTGCAGCATGTCATGCGTAATTACGGCTGGTAATGTAGTTGCTCTAATGTCATAAAAGCTCTTCGCTGGTTAATTTCTTTCAGATGTGCATCCCTGTTAATTGTTTAATATTCCGTTGATGTTATTCCGCCGGTGATTTTGCATCTACTCCTTCAAAGCCTGTGATTCATAAAGCACGAACAATGCCACATATTTGTAATCCTCTCGCTTGCCATTTAGCGAACGGATCAAAGGAAATTAGAGCATCCAACGAAACAGAAATCTGCATTTTGATTAATTGAGCTTAGCTTGACTTACAGGTCCCTCACCCACAGAAGGAGAGAGAATGTCAAATCTGTGAAGCGAACGGCTTTAGGGGACACGCAGGTGGTTGGATTTCACTCCAGCGGAGTCTTAATTACTCAACTGAGACGGCCATCCTAACCTGGATTCAGACCCGAGCCTCACGCGCTGCCAGCAGATGCCCGATCACTATCTATATGGAAATGATTTGTACACTCCAAAGTCCGAAGTGATGAAACGCCGAACCCAATGATTCATTTCGCCCCCGACAATGTAGCACTCCAAACACTTAATTACAAGCGGATCAAATTTTTATGAGCCTCTATTTCACAGTGTCTGCATCACGCATTGGGAAATATGAATTGTGAGTGAATTATCGAGTCATATTCAGGACCTCAGTCTGCTGCCAAACACCTCTTTCTAAACGCTTCCCTTAATGGGGACCTATTATGTCTTGATGTTGTTTTTGGGCTCTGTTAGAAGAGATTTGCATGCATTATTTTCCTCATATTCTCCATTGTTGCAGCTCCTCTCTTCCCAGTCTGTCAGTAACGCTCTATTTAGTTCCTGTCTCTATGAAGCCCCTCCTTCTGAAAAGCACAATGTGCTCTGATTGGTCAGCTGGAGCAGTGTGTTGTGATTGGTCAAGCGCTTCGAGCGTGTTTGGGAGATGGTTTCAGGTTGGTTTATGTCTCCGTATGCGCTCTCCTCCCGCAGTGAATGAAGGCATGGTCAAGCAGGTCTCCAATTTCTGCCCAGACCCCGGGGAACCGGAGAACGGCAAACGCATTGGCACCGATTACAGCATCGGTGCAACGGTTCGGTTCACGTGTGACGGGGATCACGTGCTTCAGGGATCCAAGAGCATCACGTGTCAGAGGGTGGCGGAGGTGTTTGCGGCCTGGAGCGACCACAGACCCGTCTGTAAAGTGAAAACATGTGGGATGAACCTCTTCGGTCCTTCAGGAACGTTTACATCGCCAAATTTCCCCATCCAATATGAGAGTAACTCACAGTGTGTTTGGATTATCACCGCCAGTAACCCCAATAAGGTTATTCAAATCAATTTTGAAGAGTTCGACTTAGAGCTTGGGTACGATACGCTGACTGTCGGAGACGGCGGAGAGGTCGGCGACTCGAAAACAATCATACAAGTGTA

Function

symbol description
csmd3 Predicted to be involved in regulation of dendrite development. Predicted to be located in plasma membrane.

NR:

description
hypothetical protein cypCar_00013567

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17495 CSMD; CUB and sushi domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00391159_00499309.mRNA False 6063 mRNA 0.50 28 390683 499760
TU156938 True 2832 TUCP 0.42 4 418294 428676

Neighbor

gene id symbol gene type direction distance location
CI01000027_00365674_00371897 CSMD3 coding upstream 18687 364990 ~ 371996 (+)
CI01000027_00250077_00273130 EIF3H coding upstream 117553 249756 ~ 273130 (+)
CI01000027_00238851_00240657 NA coding upstream 149692 238851 ~ 240991 (+)
CI01000027_00229612_00237058 RAD21A, RAD21B, RAD21 coding upstream 152924 229005 ~ 237759 (+)
CI01000027_00122108_00124986 NA coding upstream 265697 122024 ~ 124986 (+)
CI01000027_00505199_00523652 NA coding downstream 4510 504270 ~ 523652 (+)
CI01000027_00527282_00534071 NA coding downstream 27107 526867 ~ 535055 (+)
CI01000027_00637372_00642483 CTHRC1B, CTHRC1, CTHRC1A coding downstream 137612 637372 ~ 642642 (+)
CI01000027_00681087_00701456 NA coding downstream 181327 681087 ~ 701956 (+)
CI01000027_00738809_00739296 NA coding downstream 238244 738004 ~ 740394 (+)
G138115 NA non-coding upstream 143101 245883 ~ 247582 (+)
G138114 NA non-coding upstream 145375 244016 ~ 245308 (+)
G138107 NA non-coding upstream 172053 218387 ~ 218630 (+)
G138106 NA non-coding upstream 172339 218123 ~ 218344 (+)
G138155 NA non-coding downstream 143861 643621 ~ 645451 (+)
G138207 NA non-coding downstream 173891 673651 ~ 718459 (+)
G138229 NA non-coding downstream 309897 809657 ~ 809941 (+)
G138233 NA non-coding downstream 314821 814581 ~ 814806 (+)
G138030 NA other upstream 290426 39146 ~ 100257 (+)
G138238 NA other downstream 330014 829774 ~ 831683 (+)
G138247 NA other downstream 355628 855388 ~ 893121 (+)
G138290 NA other downstream 496210 995970 ~ 999181 (+)
G138436 NA other downstream 1007201 1506961 ~ 1507816 (+)
G138515 NA other downstream 1164648 1664408 ~ 1676860 (+)

Expression


Co-expression Network