CI01000027_00505199_00523652


Basic Information

Item Value
gene id CI01000027_00505199_00523652
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 504270 ~ 523652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00505199_00523652.mRNA
TTATAAAAACAAGGGAAAAGGTTATGTAAAAATATTTCCTCAAACTTAACATGCAGGAGGATGGGAATGAATTCTATAGCTATGACTCATGAATATTAATTAGTTTCATGACTGGGCACTCCAGGAGGTTCACCTAGCAGTGTCGAGTATCACCTAATTAATATTCATGAGACAAACCATCACTATGTGAATATGTCACAAACTCTCTAAGCGAACTTATGATTTTTTTTTAACCTGGCAGGCAATAAAATGGGTGAAAAATACTATAGATTTGCATTGGAGAGACATGATGCCATTGCATGAATTTAGGTTATTTTGATTTTTTTAACACAATGGAAGATTTTTTTTTAAAATTGTTTTAAGTGTAAATCTAAGAAAATGTTATTTAATTTTAGTCTTTTATATATTTTATTTATATATATATATATCTGTTCTTTTTTTTTTTTAAATATTATATTATTTTAAACAAAATTGATGTCCAGAGGGGTTATTCTACAAGTTTGATTAAACCATCAAAATATGAGGAAAATATTTTATATTTTTTAAATATTTTAAATATGAGGAAAGAACAAAACACTAAACTTGATGAAGGTATTTTTTTGGCAAAATTATCTGGCAAAAAAAAATAAAAAATGCATAAAAAAAAAAAACTGACTGGAAAAAGTAACATAATCAGTTATTAATATTTCATTAGTTTTCTCTTGTTTTGACATGTTCATAACTTCTGGCCAAAAATAATGTTGGCACTATTTGTCATGTTTCATTGTGTTATTTTCACAAATACAACTATTGATGCCAAGCACAACTATGCAATATTCTTACAAAACTTTTAATAATGACTTTCGTCCACTACTGTGCATGTATCTGTTTTTTGTTATTTTTACAGGAAAACAAGACAAAAACACTGATTTAAAAAATGATGTTTTGCAATGCACCTGAAGTATAAGATTTTAGAAATTCTCTTCGGCCAGTTTATGTTCTTCCAGACGAGCTCTAATGATGTGGTGGAGATCTTTGACGGGCCCTCCACCGAGTCTCCGCTCCTCACCTCTACCTACGGCTCCCACTCAGGAGAGCCGTTGCCGCTGAGCTCTGCCAATGAAATCACCATCAGGTTCAAAACCGAGGGACCAAATACAGCTAAAGGTTTTCATTTTGTGTATCAAGCTGTTCCAAGGACTAGCGCTTCCCAGTGTAGCTCTGTGCCCGAGCCTCGCTATGGGAAACGCATTGGGAATGACTTTGGATTGGGCACGGTTGTGCTTTTCGAGTGTAATCCAGGTTACACACTCCATGGTGCCAGTGCCATCAGGTGTGAGGCGGTGCCCAACTCACTGGCCCAATGGAACGGCACTGTGCCAACATGTGTCGTTCCGTGCGGAGGAGTTCTGACCGCGCGCCGTGGGACCGTTCTGTCTCCGGGTTACCCCGATCCCTATGACAACCACCTGAACTGCGTTTGGAAGGTCTTTGTGCCGGAGGGAACCGGAATCCAA

Function

NR:

description
CUB and sushi domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00505199_00523652.mRNA True 1496 mRNA 0.37 5 504270 523652

Neighbor

gene id symbol gene type direction distance location
CI01000027_00391159_00499309 CSMD3 coding upstream 4510 390683 ~ 499760 (+)
CI01000027_00365674_00371897 CSMD3 coding upstream 132274 364990 ~ 371996 (+)
CI01000027_00250077_00273130 EIF3H coding upstream 231140 249756 ~ 273130 (+)
CI01000027_00238851_00240657 NA coding upstream 263279 238851 ~ 240991 (+)
CI01000027_00229612_00237058 RAD21A, RAD21B, RAD21 coding upstream 266511 229005 ~ 237759 (+)
CI01000027_00527282_00534071 NA coding downstream 3215 526867 ~ 535055 (+)
CI01000027_00637372_00642483 CTHRC1B, CTHRC1, CTHRC1A coding downstream 113720 637372 ~ 642642 (+)
CI01000027_00681087_00701456 NA coding downstream 157435 681087 ~ 701956 (+)
CI01000027_00738809_00739296 NA coding downstream 214352 738004 ~ 740394 (+)
CI01000027_00765527_00776450 MIOS coding downstream 241815 765467 ~ 776763 (+)
G138115 NA non-coding upstream 256688 245883 ~ 247582 (+)
G138114 NA non-coding upstream 258962 244016 ~ 245308 (+)
G138107 NA non-coding upstream 285640 218387 ~ 218630 (+)
G138106 NA non-coding upstream 285926 218123 ~ 218344 (+)
G138155 NA non-coding downstream 119969 643621 ~ 645451 (+)
G138207 NA non-coding downstream 149999 673651 ~ 718459 (+)
G138229 NA non-coding downstream 286005 809657 ~ 809941 (+)
G138233 NA non-coding downstream 290929 814581 ~ 814806 (+)
G138030 NA other upstream 404013 39146 ~ 100257 (+)
G138238 NA other downstream 306122 829774 ~ 831683 (+)
G138247 NA other downstream 331736 855388 ~ 893121 (+)
G138290 NA other downstream 472318 995970 ~ 999181 (+)
G138436 NA other downstream 983309 1506961 ~ 1507816 (+)
G138515 NA other downstream 1140756 1664408 ~ 1676860 (+)

Expression


Co-expression Network