CI01000027_00637372_00642483 (CTHRC1B, CTHRC1, CTHRC1A)


Basic Information

Item Value
gene id CI01000027_00637372_00642483
gene name CTHRC1B, CTHRC1, CTHRC1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 637372 ~ 642642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00637372_00642483.mRNA
ATGATGTTCTGTGAGTTGGAAGGCTTTGTTTGCGGGACACTCAGGTGTGTTCTGTCAATAAAAAGCAGCGGAGCCAGACGCACTGAAGGCTTGAGCACGGCCACGGCACAGCAAGCTTATGAATATGAATACATTTCACTTCCTGGCTCGCCCGTGGCCTGTATCGAGAAGATTTATTACCTATTTAAGGACCCTTATTTCCACAGCTCTCTGCTCGCAGGCATGCTGATTAGAAGCTGCATTACTCTTGCAGGAGAGACTCAGGTGACAGCGGAGCTGCTTAATGCTGAAGCCAGACCTCCTGCGCTCAGAGTCGCGTGTTGTTCATTGCTTCATATTCGACCCTGCCGCCGCCTTATTGAGATCTGCCTCCAGGGTCCGGCAGGCCCCCCAGGAAGGGAAGGAAATCCAGGAGTGAACGGAATCCCAGGCACTCCGGGTGTTCCGGGCCGGGATGGTGCGAAAGGGCAGAAGGGTGATTGTGTGATGGAGAGGTTTGAAGAGCCGTGGAAGCCCAACTACAAGCAGTGCGCCTGGAACTCTCTCAACTACGGCATTGACCTGGGCAAAATCACAGAGTGTACGTTCACTAAGCAGCGTGCGGACAGTGCTCTGCGTGTGCTGTTCAGCGGCTCGCTCAGGCTGAAGTGTAAGACGGCTTGTTGCCAGCGCTGGTACTTCACATTTAATGGGGCAGAATGTGCCGCTCCGCTGCCTGTAGAGTCCATCATTTACCTGGATCAGGGCAGTCCAGAGTTCAACTCCACCATCAACATACACAGAACCACATCAGTTGAAGGTTTGTGTGAAGGAGTTCGGAGAGGCCTGGTGGATGTTGCTATCTGGGTGGGAACCTGTGGCGACTATCCCCATGGAGACGCTTCCACCGGATGGAATTCTGTTTCCCGGGTGATCATAGAAGAGCTTCCTCAGAGCAGCTGAGATCATCAGGAAACTCTTCCACCATCAACACACTTACTGCATCAAAAATTGTGATTTCTCACTTAGATAAATGCCTCTAATGTAATGCATTACCATTGAAAAGTTTGGGGTCAGTAAGAAATTTATATTTTTATTTAGCAAGGATGCATTAAAATGAAA

Function

symbol description
cthrc1b Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human CTHRC1 (collagen triple helix repeat containing 1).
cthrc1a Acts upstream of or within cell adhesion; convergent extension involved in axis elongation; and gastrulation. Predicted to be part of collagen trimer. Is expressed in several structures, including axis; margin; musculature system; shield; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human CTHRC1 (collagen triple helix repeat containing 1).
cthrc1 Predicted to enable Wnt-protein binding activity and frizzled binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to act upstream of or within several processes, including establishment of planar polarity involved in neural tube closure; inner ear development; and ossification involved in bone remodeling. Located in extracellular space. Part of collagen-containing extracellular matrix. Implicated in Barrett's esophagus.

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00637372_00642483.mRNA True 1101 mRNA 0.50 4 637372 642642

Neighbor

gene id symbol gene type direction distance location
CI01000027_00527282_00534071 NA coding upstream 102317 526867 ~ 535055 (+)
CI01000027_00505199_00523652 NA coding upstream 113720 504270 ~ 523652 (+)
CI01000027_00391159_00499309 CSMD3 coding upstream 137612 390683 ~ 499760 (+)
CI01000027_00365674_00371897 CSMD3 coding upstream 265376 364990 ~ 371996 (+)
CI01000027_00250077_00273130 EIF3H coding upstream 364242 249756 ~ 273130 (+)
CI01000027_00681087_00701456 NA coding downstream 38445 681087 ~ 701956 (+)
CI01000027_00738809_00739296 NA coding downstream 95362 738004 ~ 740394 (+)
CI01000027_00765527_00776450 MIOS coding downstream 122825 765467 ~ 776763 (+)
CI01000027_00779517_00795032 NA coding downstream 136312 778954 ~ 795389 (+)
CI01000027_00909268_00918831 NA coding downstream 265871 908513 ~ 919213 (+)
G138115 NA non-coding upstream 389790 245883 ~ 247582 (+)
G138114 NA non-coding upstream 392064 244016 ~ 245308 (+)
CI01000027_00238851_00240657 NA non-coding upstream 396587 238851 ~ 240991 (+)
G138107 NA non-coding upstream 418742 218387 ~ 218630 (+)
G138106 NA non-coding upstream 419028 218123 ~ 218344 (+)
G138155 NA non-coding downstream 979 643621 ~ 645451 (+)
G138207 NA non-coding downstream 31009 673651 ~ 718459 (+)
G138229 NA non-coding downstream 167015 809657 ~ 809941 (+)
G138233 NA non-coding downstream 171939 814581 ~ 814806 (+)
G138030 NA other upstream 537115 39146 ~ 100257 (+)
G138238 NA other downstream 187132 829774 ~ 831683 (+)
G138247 NA other downstream 212746 855388 ~ 893121 (+)
G138290 NA other downstream 353328 995970 ~ 999181 (+)
G138436 NA other downstream 864319 1506961 ~ 1507816 (+)
G138515 NA other downstream 1021766 1664408 ~ 1676860 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location