CI01000027_00701871_00719591 (COL28A1B)


Basic Information

Item Value
gene id CI01000027_00701871_00719591
gene name COL28A1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 701766 ~ 719591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00701871_00719591.mRNA
AATGTCCACTAGAGATCGCATTCATCCTGGACAGCTCAGAGAGTGCAAAGAGCTTTCTGTTTGATCAAGAGAAAGTATTTGTGCGCTCCTTCAGCAGGCAGGTGGTGCAGATGCAGGTGTCTGACTGGCATCTGAAGACTCGTTTGGCGCTCATCTACTACAGCAGTTCAGTGCATATCGACCAACGCTTCAAAGACTGGCAGGACCTTGACGTCTTTCTGAGCAGATTAACAGACGCCATGTACATCGGTCAGGGGACATATTCAACATATGCCATATCCAACGCCACTCAGCTCTTCACCAGCGAGACCAAGGAGCAGAGTGTTCGGGTGGCCCTGCTCATGACCGACGGCATCGACCATCCGCGGAATCCTGACATCATGAGGGCGGTCGCAGAGGCCAAAGGCCACAACATTAAGATCTTCACAATAAGCTTATCATACCTGGCAAAGAACAACGTGAACAGTGCCAAACTGCGGGACATAGCGAGCAGCCCAGCCCATCAGTTCTCCCACAGCCTCACTGACCCCAAACTGGAAGAACGGCTCCTGCAGCAGCTCGAAATAATTGCAAAGAATGAATGCCCACGACCACCGTGTTTGTGTGAGAGAGGTGAACAGGGTCCTCCAGGAGCTCCTGTGAGTATCGCTGGCATGGAATTGAGGCCATTTTATTTCACTTGTGTCATTTATGAGGAAAACTCTGTTTTGTTTAGGGTAAAAAAGGAGATCGAGGTTATGAAGGAGCACCTGGTCAAAAAGGCTCAAGGGGAAGACCTGGGTTCAAAGGTGATAAGGGGGATCGAGGGCCGGATGGTGCGTCTGGCCCGCCAGGAGATATTGGAATTGGATTCCCAGGTCCAAAGAGGAATCCCAGGAAGACCAGGTCCTCCAGGTCAGGTTGGCGTAGGTCAGCCAGGTCTACCTGTAAGTATAAACAGCCTCTTGTATGACTTTAAAACATCCATCTACTGTACAGACTATAATGAGATAATGATACATGCATCAATGAAGGGTCCTCCAGGTTTACCAGGATCACAGGGGAAACCAGGAGCTCCAGGCGAAGGACTTCCTGGCCCAAAGGGTGACCGTGGCTATGTCGGCCCTACTGGTGGACGTGGACCCCCAGGTTATGGAGGCAAAGGTGAAAAGGGCAACATGGGACCTCCTGGATCACCTGGACTATTAGGAATGCCTGGCAGGGGAATTCAAGGAGAGAAAGGGAATCAGGGACCAGCTGGTCCTCCTGGTCAGAGAGGGAATCCTGGGATAGGACTCATGGGTACAAAGGGAGAACAGGGATACCCTGGAGATCCTGGAGCCACTGGAGAAAGAGGAATTGGAGAACCAGGACCAAAAGGTGAACCTGGATTCCAAGGTTTACCAGGTGTACGAGGTGTACCAGGAGAAGATGGAGCCAATGGACCAAAGGGTGATTTAGGCCTACCAGGGTCCAAAGGACAAGATGGAGCTCCTGGAAAAGGCCTACCAGGAGAGAAGGGGGATCGAGGTGAGAGGGGCTCCAAAGGCCATCCAGGACCAATGGGACCAGCTGGGCCAATAGGGGCAAAGGGAAACCCAGGGAATGTTGGACTTCCAGGTGTTCCTGGGCCTTCAGGAAGAGGCATACCTGGAGCTAAGGAGATCTCATACCATGTTCATCTTGCTGTAGGGAGATCCAGGGCCAGTTGGTCCACCAGGACTTGCTGGAGAACCAGGGATAGGCATTGCAGGGCCGAAGGTTGTGGCCGGATATGCAGAGTAAAACCTCTTGAGCTGGTGTTTGTGATTGACAGCTCTGAGAGCGTCGGCCCGGAAAACTTTGAAATCATTAAAGACTTTGTGAATACCTTGATCGACCGCGTGTCAGTCAGTCCGAAGGTGACGCATGTAGGGGTCGTTCTCTACAGCCACATTAACCTGGTGATAGCAAGCATAAACGAGAGTTTAACTCGTGAAGAAGTGAAAGCAGCTGTGCGCAGGATGCCTTATATTGGGGAGGGCACTTACACAGGAAGTGGCATCAGAAAGGCCAATGAGATCTTCCACTTTGCTCGCCCTGGTGTGGGGAAAGTGGCGGTGGTTATTACGGATGGTCAGACGGATCATCGTGACACGGTGAAGCTGGAAGATGCGGTCAAAGAGGCTCATTCAGCCAATATCACCATGTTCGCTATAGGGGTGGTGAATCAAAGTGACCCGATCTATAATGATTTTAAGGAGGAGCTGAAGTCAATAGCGTCCCCGCCCACTGAGGAGCATGTGTTTTCCATAGAAGACTTCAGAACACTTCCTGAAGTGGAAAGTAAATTGCTCCAACAGGTCTGTGAGAACATTACCTCCAGCTTCAAGCCAGATGACCTTGGAGAGTTTGGCGTGTTCCCCTACTACGATCCTAAACCAGATGACACGGACATTATCAGCACCATTACACCATATTTGGGAAGAGAAGACCTGAACCTCCTCCCAGATCAGGGCACATACAGGACTCCCCCGAAACAAAGACCAACTGACTCGTCGCTGCTCGTACTGAATCATTTTACCGCAGGAGGGGTGCCTAGAGCCTTTGGATCCCGGTCCATTCATGTGCTCAGTTCTGGTTTGGAGGTTGCAATGGCAACAAAAACCGATTTGATAGTGAACAGACCTGCAGAAAATCCTGTGTGTCTTATCATTAGAGCGCTGAAACTGATGCAAAAGGACGGGATACTAAAAAAAGAGAGAAAGAAATAAAGCTAATGGACCATTTAGTATTTAAAAATATTTTAACTTTTAATATTTAACTATGAACATTTTAAATAACTAAACTGCTCAGAAGAACTTGAACAATTAAATAAA

Function

symbol description
col28a1b Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Is expressed in epidermis and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).

NR:

description
unnamed protein product, partial

GO:      GO:0005578, GO:0005576, GO:0005581, GO:0004867

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00701871_00719591.mRNA True 2837 mRNA 0.50 19 701766 719591

Neighbor

gene id symbol gene type direction distance location
CI01000027_00645077_00650763 SLC25A32B, SLC25A32 coding downstream 50481 644241 ~ 651285 (-)
CI01000027_00332200_00343377 NA coding downstream 357727 331982 ~ 344039 (-)
CI01000027_00178291_00179467 EXT1B, EXT1A, EXT1, EXTL1 coding downstream 522299 178289 ~ 179471 (-)
CI01000027_00137910_00141799 NA coding downstream 558489 137292 ~ 144599 (-)
CI01000027_00131884_00132650 NA coding downstream 569116 131395 ~ 132650 (-)
CI01000027_00742700_00758723 COL28A1B coding upstream 23040 742631 ~ 758723 (-)
CI01000027_00798826_00806532 ICA1 coding upstream 79095 798686 ~ 806532 (-)
CI01000027_00808322_00809068 NA coding upstream 88477 808068 ~ 809068 (-)
CI01000027_00823197_00901936 THSD7AA, THSD7A coding upstream 102634 822225 ~ 901936 (-)
CI01000027_01059994_01067301 RAB11A, RAB11AL, RAB25, RB11A coding upstream 339337 1058928 ~ 1067361 (-)
G139294 NA non-coding downstream 78639 620674 ~ 623127 (-)
G139220 NA non-coding downstream 192105 487244 ~ 509661 (-)
G139228 NA non-coding downstream 192309 508400 ~ 509457 (-)
G139219 NA non-coding downstream 224408 474446 ~ 477358 (-)
G139354 NA non-coding upstream 264899 984490 ~ 984744 (-)
G139359 NA non-coding upstream 285578 1005169 ~ 1005411 (-)
G139360 NA non-coding upstream 287603 1007194 ~ 1007422 (-)
G139364 NA non-coding upstream 308678 1028269 ~ 1029875 (-)
G139117 NA other downstream 464187 234212 ~ 237579 (-)
CI01000027_00108990_00118237 NA other downstream 583463 108119 ~ 118408 (-)
CI01000027_01241417_01245177 NA other upstream 525044 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 582443 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1402539 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1507034 2225781 ~ 2227499 (-)
G140118 NA other upstream 2781943 3509352 ~ 3584679 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010254 col28a1b coding NC_007127.7 CM002900.2 47308856 ~ 47344147 (+)