CI01000027_00742700_00758723 (COL28A1B)


Basic Information

Item Value
gene id CI01000027_00742700_00758723
gene name COL28A1B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 742631 ~ 758723 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00742700_00758723.mRNA
ATGAGGGCGGTCGCAGAGGCCAAAGGCCACAACATTAAGATCTTCACAATAAGCTTATCATACCTGGCAAAGAACAACTGCCCACGACCACCGGTGTGTTTGTGTGAGAAAGGTGAACAGGGTCCTCCAGGAGCTCCTGTGAGTATCACTCGCATGGAATTGAGGCAATTTTCCCTCACTGGTGTCATTTATGAGGAAAACTCTATTGTGTTTAGGGTAAAAAAGGAGATCGAGGTTATGAAGGAGCACCTGGTCAAAAAGGCTCAAGGGGGGAAACAGGAGCACCTGGTCTTCCAGGAATCAACGGTGCAGAGGGAAGACCTGGGTTCAGAGGTGATAAGGGGGATCGAGGGCCGGTTGGTGCGTCTGGCCCGCCAGGAGATATTGGAATTGGATTCCCTGGTCCAAAGGGCTCCAATGGTCAGACTGGTCCAGCTGGTCCTCCAGGATTACCAGGAGAGGGCATACAAGGACCAAAGGGTGATCCTGGATATCAGGGTATACAGGGGCCAAGAGGGTCCCCTGGAGAGGGTCTGCCGGGACAGAAGCTCTGAGAGCGTCGGCCTGGAAAACTTTGAAGTCATTAAAGACTTTGTGAATACCTTGATCGACCGCGTGTCAGTCAGTTCGAAGGTCTGTGAGAACACTGATGGATCAATATTCAGCACTACCTCCAGCTTCAAGCCAGATGACCCTGGAGAGTTTGGCGTGTTCCCCTACTACGATCCTAAACCAGACGACACGGACATTATCAGCACCATTACACCATATTTGGAAAGAGATGACCTGAACCTCCTCCCAGGTTTCTCTTTTACGCCTTTGGACCGGCTGAATCGGGGCACATACAGGACTGCCCCGAAACGCAGACCAACTGACCCACTGCTGCTTGTACAGAATCATTTTACCACAGAGGAGGGGTGCCTAGAGCCTCTGGATCCCGGTCCATGTCGACAGTATGTTGTTAAATGGTATTTTGATCCTAACGCCAATTCATGTGCTCAGTTCTGGTTTGGAGGTTGCAATGGCAACAAAAACCGATTTGATAGTGAACAGACCTGCAGAAAATCCTGTGTGAAAATGTAAGTCTTATCATTAGAGCGCTGAAACTGATGCAAAAGGACGGGATACTAAAAAAAGAGAAAAAGAAATAAA

Function

symbol description
col28a1b Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Is expressed in epidermis and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).

NR:

description
unnamed protein product, partial

GO:      GO:0005578, GO:0005576, GO:0005581, GO:0004867

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00742700_00758723.mRNA False 1152 mRNA 0.49 11 742631 758723

Neighbor

gene id symbol gene type direction distance location
CI01000027_00701871_00719591 COL28A1B coding downstream 23040 701766 ~ 719591 (-)
CI01000027_00645077_00650763 SLC25A32B, SLC25A32 coding downstream 91346 644241 ~ 651285 (-)
CI01000027_00332200_00343377 NA coding downstream 398592 331982 ~ 344039 (-)
CI01000027_00178291_00179467 EXT1B, EXT1A, EXT1, EXTL1 coding downstream 563164 178289 ~ 179471 (-)
CI01000027_00137910_00141799 NA coding downstream 599354 137292 ~ 144599 (-)
CI01000027_00798826_00806532 ICA1 coding upstream 39963 798686 ~ 806532 (-)
CI01000027_00808322_00809068 NA coding upstream 49345 808068 ~ 809068 (-)
CI01000027_00823197_00901936 THSD7AA, THSD7A coding upstream 63502 822225 ~ 901936 (-)
CI01000027_01059994_01067301 RAB11A, RAB11AL, RAB25, RB11A coding upstream 300205 1058928 ~ 1067361 (-)
CI01000027_01072444_01076227 RAB25B, RAB25, RAA2A, RAB25A coding upstream 313292 1072015 ~ 1076227 (-)
G139294 NA non-coding downstream 119504 620674 ~ 623127 (-)
G139220 NA non-coding downstream 232970 487244 ~ 509661 (-)
G139228 NA non-coding downstream 233174 508400 ~ 509457 (-)
G139219 NA non-coding downstream 265273 474446 ~ 477358 (-)
G139354 NA non-coding upstream 225767 984490 ~ 984744 (-)
G139359 NA non-coding upstream 246446 1005169 ~ 1005411 (-)
G139360 NA non-coding upstream 248471 1007194 ~ 1007422 (-)
G139364 NA non-coding upstream 269546 1028269 ~ 1029875 (-)
G139373 NA non-coding upstream 285318 1044041 ~ 1044379 (-)
G139117 NA other downstream 505052 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 608829 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 624328 108119 ~ 118408 (-)
CI01000027_01241417_01245177 NA other upstream 485912 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 543311 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1363407 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1467902 2225781 ~ 2227499 (-)
G140118 NA other upstream 2742811 3509352 ~ 3584679 (-)

Expression


Co-expression Network