CI01000027_00779517_00795032


Basic Information

Item Value
gene id CI01000027_00779517_00795032
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 778954 ~ 795389 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00779517_00795032.mRNA
ACATAAAAAAAAAAAAAAACATTCCTCATCTCCAAAGCAGAGTGCTTATTTTTCCATGCAACGCTTAACTCCGCCCCCCGCAGGAAATGCAGTGATCTCATTGGCTCTTTGCGGTAAGAAGGAACGTATAACCCAATAATGATCGAACATCGCTGAGCTCCAATCAGATGCAGCACGCACGCGTCTTCCGCCCGCCCACTGCCTTTACTGCAACATCTGTCAGCGCAGGAGAACTAGAGTTTAGTCTTGCTTCTGAACTTTGTGTCAACTTTGATTCAGAGTTTTACAGGGAATGACAAGCTAGTACGCGCACAATAGATTAAGAGGAAGCAAAGTTTTAAAATAGCCCAGCTTTTCGCATGAACGCGTTTTCAGTTCTCGTTCTGGAGTTTATTGTGTCCCGTGCACATTTACGCACCAAGAGCAATAGTAACTCTAGACTTCAGCCTGCCTCTGCCAGTGTCCCTCTGAGATGGAGTGATGAGAGATCTCCTTCGTTCTTCTCTTCAAGACACAGCAGAAGCCCTTCATCATCATCATCATCATCATCACATGCTGTAAATATGAAGCAGATCACTAAGCCCATCCGGATCCCATCAGAGAATCACTTTATAACAGCAGGGAAAGCACGATCAGCCAGTCGACAGCCGCCCTCATTGGACAAGCTGCCTGAGCAATACCTGATTGGACAGTGGCCGCGAGAGCCGTACCAACCCCAGCCGTCCTGCATGAGTGATAAAGCCACGCAGACGCCTGGATTTTGGACTGAGGAAGGAGGAGAGGTTAACGTACACAAGCGCTCGGCATCGTGGGGCAGCGCTGACCATCTCATAGAGATTGCTAAACTCCGGCAGCAGCTCCAGCGCAGTTTGCAGTGCAGTCGCAGTATCAAGGAGAAAGAAGAAGTGACGCCGCTGAATCAGATCCAGACAAAGCGACTCTCGGCATCTTCATCTAATATGGTCCATTCAAGACCCCTCATATGTAGAATGCCCAGCTATAGTGACTGTATTAACCAGGAGCTGGAGAGCGTCTTCATCTGTGAGGACTGGGGGAGGGAGGAGGAGAAGGCTTTGGAGGTGCGAGACGGTGGCCGTGCACCTGTGCCTCCTCTTCATCACGGTGACCTTCACACTCACAACGCTGAGATGCAGATCTGCTGCAGTCCTTGTTACTCCTGCTCTCCTACTCCGGACACTGAGAAAGATTACAGGAACGGTTCACCTCTGCCTCAGTTTTCCAGCTCTCCCAAACCCAACAACAGTTATACGTTTAAACGTGAGCCTCCTGAGGGCTGCGAGAAAGTCAAAGTGTTTGAAGATCTCATCACTTGTAGGACACAAGGCTTTCCCATCTTTTCCTGCCCCGACAGAAACAAGGTGAACTTCACTCCAAGTGGTTCTGCCTTCTGTCCTGTAAAGCTGCTGTGTTCGTCCCTATTCCCATCAGATGCTGCTGCTCGTCCCAGTCCGCTGGATAATCAAACTTCAGGACAGACGTCTGGTCCATTTACAGAGACCACTGTACAAAACAGCTTCCCGCTGCCCTCTGAATGCTGCAGTATTAGGAAGTGCCTGCTGCTCAGTTAGCCAATCAGAGCTCAGATCTGAAACAGCTGTCTGAATCAACTTTCTAGGAAGTTTCTTACTTGCTAATGGTTGTACAACAGGACCATTATGCTGTACATTGAACTTTGTCTTATGGTTTCATGTAATTCTGCTGGAATGCACAAATCTTTACTTAATCTTACAGCACATCCTACTAACCAGGTTAAACACATTAGATATGACAGTAACTGCTGCTGTAATCCAACAGCCAAAAATCTTATTTCATGCCTTAACACTTAACTCAGGTTTAGCTTCCATAGGGGCTGGATGATATAGCTATAACTAATTATATCTCAATATTATTTTGCATTCTTTTAATGAAACATATATATTTTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00779517_00795032.mRNA True 1946 mRNA 0.47 8 778954 795389

Neighbor

gene id symbol gene type direction distance location
CI01000027_00765527_00776450 MIOS coding upstream 2191 765467 ~ 776763 (+)
CI01000027_00738809_00739296 NA coding upstream 38560 738004 ~ 740394 (+)
CI01000027_00681087_00701456 NA coding upstream 77407 681087 ~ 701956 (+)
CI01000027_00637372_00642483 CTHRC1B, CTHRC1, CTHRC1A coding upstream 136312 637372 ~ 642642 (+)
CI01000027_00527282_00534071 NA coding upstream 243899 526867 ~ 535055 (+)
CI01000027_00909268_00918831 NA coding downstream 113124 908513 ~ 919213 (+)
CI01000027_00949578_00953698 NA coding downstream 153332 948721 ~ 954281 (+)
CI01000027_00980123_00987611 NA coding downstream 183766 979155 ~ 987884 (+)
CI01000027_01033975_01037549 NA coding downstream 237514 1032903 ~ 1037922 (+)
CI01000027_01045587_01050470 MEX3A coding downstream 248003 1043392 ~ 1050863 (+)
G138207 NA non-coding upstream 60495 673651 ~ 718459 (+)
G138155 NA non-coding upstream 133503 643621 ~ 645451 (+)
G138115 NA non-coding upstream 531372 245883 ~ 247582 (+)
G138114 NA non-coding upstream 533646 244016 ~ 245308 (+)
G138229 NA non-coding downstream 14268 809657 ~ 809941 (+)
G138233 NA non-coding downstream 19192 814581 ~ 814806 (+)
G138234 NA non-coding downstream 20605 815994 ~ 821269 (+)
G138247 NA non-coding downstream 63953 855388 ~ 893121 (+)
G138267 NA non-coding downstream 138354 933743 ~ 934498 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 350278 390683 ~ 499760 (+)
G138030 NA other upstream 678697 39146 ~ 100257 (+)
G138238 NA other downstream 34385 829774 ~ 831683 (+)
G138290 NA other downstream 200581 995970 ~ 999181 (+)
G138436 NA other downstream 711572 1506961 ~ 1507816 (+)
G138515 NA other downstream 869019 1664408 ~ 1676860 (+)

Expression


Co-expression Network