CI01000027_00823197_00901936 (THSD7AA, THSD7A)


Basic Information

Item Value
gene id CI01000027_00823197_00901936
gene name THSD7AA, THSD7A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 822225 ~ 901936 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00823197_00901936.mRNA
GTCCATGGGGAAGATGTATGGGCAGCGAGTGTGGTCCAGGCGGGAGTCAGAGTCGAGCGGTGTGGTGCGCTCATGTGGAAGGCTGGACGACCCTTCACACAAACTGCCTTCAGGCCACACGGCCAGCCAACCAGCAGAGCTGTTTCCGCGTCTGCGACTGGCACAAGGACCTGTACGACTGGCGACTAGGCGCGTGGAACCAGTGCGTTCCCATATCACTGCGGACTGGCCGCACAGGTGTTTGCTTGCAGGGCGAAGAGGGCATCCAGACGCGGGAGGTGAACTGTGCTCTCAGGGCGGATGGCTCGGCGGCCGACGACGCCATCTGTGAGTACTTTGAGCCCAAACCCCGGCAGGAACAGGCCTGTCTCATCCCCTGCCCTCAAGACTGTGTGGTGACCGAGTTCACCCCCTGGACCACGTGCTCCAAGACCTGCGGGCTGGGCCTGCAGAACCGTGTCCGCTCCGTAGTGGCGCCACCACTTTTCGGTGGGCTTCCTTGCCCCAATCTGACGGAGTTCCAGACGTGTGCGCCAAGGGCCTGCGAGGGCAGAGAGACAGTGTTCAGTCTGAGAGTGGGCGGCTGGAGCGAGTGCAAGCTGCCTTCTTTACCACCACCACCACCGGAGCCGACCTCCTCTGCCGCCCCCGCACGCACTATACGCCAAGCCCGGCGGCGGAAAGGCAAAGAGAGGAAAGGAAACAGAGACCCGGAGATGCGTGAGCTTATCAAGAACAAAAGGAACCGCAACAGGCTGAATCGACTAGAGAACGACCTCTGGAATATCGAAGTAGGCTACCAGTCTCGGCAAGTGGTTTGTGTACATCGGAATGGAAGTAAGGTATCACTCAGCCAGTGTCCCCACTGGAGTCTTCCGGAGACTTACCAGTCCTGCCTGATGCCTAAAGACTGTGTGGTCAGTGAATGGAGCATGTGGGGCTCCTGCACCAAGACCTGCTCGGACCCCAGTGTTCCTCAGGGCACACGCTCCCGCAGCAGACAGCTGCTACGGCTTCCTACTGGAGGAGGGTCCGAATGCCCCAACCTGGAGGAAAGTCAGACCTGTGAACCTGAAGGAAACGGGATGGCCCACACTGGCACATCGTCACAGGACACACAGCGCTTTCTGAGTCTCCCACGTATTGTGAATAGTTATGCCTGGAGGACCACAGAATGGAGTGAATGTCGCGTTGACGCGCTTCTCAGCCAGCAGGACCGGCGGCGTGGGAATCAGACTGGACTGTGTGGTGGAGGTGTGCAGAGCAGGGAAGTGTACTGTGTCCAGGCCAATGCAGAACTTCTCAGTTACATCAATAACAACAAAGACAAACAAGGGAACTCAACCAAATGTGACAAAAACCAAAAAGTTTGGCATGGACTGTTTGGCACTTCTGAAGGTCAGTCTCCAAATGGCCAGACGCCTAGTGTCCCTCCTCTCCTGTCTATCACCTTTGAGATCTCAGCATCACAACCCGTAGACATTCGGCTCTGCAAGGGAACGTCTCCAAGTACCACGCAGCTGTGTCACATCCCGTGCCCTGTGGAGTGTGAACTGTCCCCGTGGGGCGCCTGGGGGCCCTGCACCTTTGAGAATTGTGATGAACGGGTTGTGAAGAAAGGTTTCAAGTTCAGACGACGTACAATAACTAATGACCCCACGGGTGGTGAGGGGAGCTGTCCTCACCTGGTGGAGGCCATCCCGTGCGATGATCCCAGCTGTTTTAACTGGCAGCTGGTCAAGCTAGAGGAGTGTATCCCTGAAGAAGACATGGACTGCGGAGAGGGAACTCAGATTCCACAGGTCCGCTGCGTCAACAATGAAGATTTATCTGAAATAGTGGATATCAAAGAAACAGACATATTTAGTCTCTTTCAAATACTCATTGTTTATAACCTGGCAGACTTGGCATCTGCTTCACTCCGACAGTCGGAGAGTGACGCGTACAATATTGCCTCACAAATGGCCACAGTTCTGACACAGATCGATGTAAATATTGTATCTCTATCTGCTACAAGGAAAACTTGGAGTGTCCCTGCTTTTGATAGAAATATTTATTGCGTGTTTGTGGTTCAGTACTCAAGCAGAGACATCCACAGTAAAAATATTCAAGGTACAGAGGTGGAGAGGGAGATGTGTGCGGATGAGGTCTACCCTGCATCTGTGCCCTGTATGGTTCCCTGCCCTAAAGACTGTGCTCTCAGTCTCTGGACTGAATGGTCCACCTGCTCCCAGACCTGCTCCAGCAAAACCGCCGAGGGCAAGCAGATGAGAACCAGAGCCATTCTGGCTTACAATGCAGGAGAAGTGCATGAGATTAGCCTTAAAAAGCTGACAGGAGACTGTCAAGGAAAGACTCACACAAGGGCAGAATTTCTCAACCTAAAACCGTCTGAGATTCTGATGGATGGCTCCTCGCTCTCGCAGCGATGTGCTGTGACATCACCGCGAATCAGTGTTCCAAAACTCTTAAATCCACTTTATCTGTTCCAGCAAGGTTTAGTGTCAGTTTACATGATCTATATCCAATTATCGCTATGCTTTCTCTACAGTGACGTCAATGGTAGTGGCATGGATTACAGTTATGGAGGTCGAGTAGTTCCTGAAATATTTACTCCCTTAAAGAAAAATACAAAGATGCTCATAACTTTTGCTTCATCTCAAGGTCTTACGAGGGTTCCAAAGTTTCCTGAACTCTATGGAGGTTCCAGCTGTCCGAACACCAGCGCCCTACAGGAGGTGCGGAACTGTAATGAGCATCCTTGCATCGTGTATCACTGGCAGACGGGCCCCTGGGGACAGTGCGTGGAGGACACCACCACATCCACCCTCAATACCTCCTCCAGCGCAGACAAGTCCACCTGCACAATGGGCGTGCAAACGCGCAAGGTCATCTGCGTAAAGGTCAATGTCGGACAGGTGCCACCCAAAAAATGTCCTGAAGCCCCTCGGCCAGAGTCAGTACGACCCTGTCTGCTGCCCTGTAAGAGAGACTGTATAGTGACACCCTTCAGTGAATGGACAGAGTGTCCCACATCCTGTGAAGCAGGTGTGAACGGGCAGAAGAATAAACAGTTTCGATATCGAGTGGTCATCCAGATGCCAGCTAATGGAGGTCAGGAGTGTCCGGACGTCCTTTATGAAGAGAAAGACTGTGCAACTCCATCTGTCTGTCCGGGTTACAGGTGGAAAACACACAAGTGGCGTAAATGTCAGCTGGTCCCATGGAGCATCCGCAGAGACAGTAAAGGAGCTCAGGAGAACTGTGGAGCTGGAGTCCAAACTAGAGACATTCCTATCACTCATAAGGCAGTGGAAGACTTTATTATGTATTATACTGGTATAGATATTGGTCTGACAAATGCTTCCATCAAACTAGACTTCACATTTGCCCTTCAGTGCATGTCAAGAGCAGAAGCAATCCTTCAAACTCTTAATCTGATTGCTGTCGACACTATCTCATGTAGGCAGCTGGATGGTACAGTGGCTGATGTTGTGCAGTGTCTGAAGTTTGCCAGCAGTATGCCTGTTATGAGCCAGCCCTGCCAGTTACCGTGCCGAGACGACTGCCAGCTCTCCAACTGGTCCAAGTTCTCTCCTTGCAGCTCGGACTGCGTAGGGGTCCGTACACGAAGGAGAGCTCTCGTGGGAAAAAGCAAGAAGAAGGATAAGTGTAAGAACAGCCAGATGTACCCGCTGAGCGAGACCCAGTACTGCCCCTGCGACAAATACAACGCCCAGCCGGTGGGCAACTGGTCTGACTGCATCTTGCCCGAGGGCCGTGTGGAAAGCGCTGTGGGCATGAAGGTCCAGGGAGACATTAAGGAGTGTGGGCAGGGCTACCGGTTCCAGGCCATGGTGTGCTACGACCAGGATAACAGACTCGTGGAGACTTCACGCTGTAACAGTCATGTGAAACTTTTGGTGCATTGCTCTCTTAATCTTGTTATTTGGATGACGAGCAGGCTGGGTATATCGAGGAGGCCTGCATCGTCCCTTGCCCTTCTGATTGTAAACTCAGTGAATGGTCCAACTGGTCGCGCTGCAGCAAATCCTGTGGCAGTGGGGTCAAAGTTCGCTCAAAATGGCTCAGAGAAAAGCCTTACAATGGAGGAAGACCCTGCCCAAAACTGGACCACCTTAACCAGGTGTATGTTGAACACAGTGGACGGTCCCACTGACGCGGTTGAAGACTATCTGTGTGATCCAGAGGAGATGCCACAGGGCACGAGGGAGAGCCGACTGCCCTGCCCGGAGGACTGTGTGCTGTCTGACTGGAGTCCCTGGACCCCATGTGACCTGCCGTGTTCTGGAAGAGGAGATCGGGAGAGGACGGCGTTTGCCCTGCGTCTGCCTAAAGAAGGAGAGGACTGTCCGGTTAGCATGCAGACCGAGCCCTGCCTCCTGAACCGCAACTGCTTTCACTACAGTTACAACATCACCGACTGGAGCACATGCCAATTAAGTGCCAATGCTGTGTGTGGAATCGGTCTCAAGACGAGGATGCTGGACTGCGTTAGAAGTGACAGAAAATCAGTTGACCTGAAGTACTGCGAAGAGCTGCGCTTAGAGAAGAAATGGCAGATGAATGCTTCCTGCACAGTGGAGTGTCCAATCAACTGCCAGCTCTCTGATTGGTCAGCATGGGAAGATGTGGCGGAGACGGACTGTGGTTCAGGCGTCTCAAGGGGACGGCAGGCCGTGTCCGTCTCAGATGGAGCAGTGGAAACCGTGTCCTGTGCGACCCTGCTACAGATGGCAGTACGGCCCGTGGAGGTGGTGTGCGGGGTGGGCCTGCGTTTCCGGAACCTGTCGTGCTTTGTATCAGACGGCTCCAGTGATGGGAAGAGCAGCATTGTAGAGGAAGATCTCTGTGCTGGATTGGAGCAGGCCGTCGACGGAGATAAGAAGATTGTTCTGGAGGAGACCTGCACCTTACCCTGCCCTGGTGACTGTTACCTGATGGAGTGGTCCGACTGGAGCCAGTGTCAGAGAGTGTGTGTGAAGGGTCAGCGTTTGGACTTCACTCCGGTTCAGGTCCGCTCACGTGCCGTCATCGCGCAAGAACCGGAAAACATCGCTCAGTGTCCGGATCAGGAGTGGCAGTCCCGCCCCTGCAGCAATGGTGAATGTTATGAGTACCAGTGGATGGGCGGTCCTCAGCTGATCTGGTGTCAACGCTCGGATGGAATAAACGTCACAGGTGGATGCCCTCCAGCACTACTGCCAGGGGCGGACCAGTCATGTGATCCACTTTGTGACAAACCACAGTCATTCTGCTCAGAGGAGGGCGTATGTATGTGCGAGGAGGGCTATACCGAGGTCCTGACGGCCGAGGGGATGCTGGAGCAATGTACACCCATCCCTGTGCTCGAAATCCCTACCGCAGGGGACAAAAAAGCCGATGTGAAGACCAGCCGGGCCATCAACCCCACCCTGCCCACCACGGTGCAGCCTGGCCGTGTGGGACGTACATGGTACTTGCAACCCTTTGGACCAGACGGAACGCTGAAGACGTGGGTGTACGGAGTGGCGGCAGGTGTTTTTGTCCTCCTGGTATTTATAGTGTCAATGATTTACCTCGCATGCAGTTACTGTGCCATCCGGCGGTCGCTCGGGACGCCAGATTCTGCCAATGGTACGGTGGTATGGATGGGCCAAGACGCCCATGAACTGACGTACACCTGCCCTGAGTGCCAGCAGCCAAGTCAAGAGTCAAGAGCCAGTTAAAGGCCGGAGAAACAGGCTCCTGATCTCCTGACATCTCAGCCCCCTCTGCCTAGTGCCTCGGCCTCAGTCTGTGCCTTACGTTCTGATGCTCAAAGCATCGAGCTGCCCGGGTAGACTGCCTATCTATGGTTTATTAGATTAGAAAAAGATAAAGAAACTAACTCTGTTGCAAAACCTAGTGAGCTGCCTTGGTGCCTACTAACTAAAACAGCATTGATAATCTTAACTGAAGGATGAAGTGAAAAATAACCTCATAAGTGAGTTTTAAAATCCTAATAATCCATGCTACACACATGTACTGGGTAAAATGGTCAATTTTTAAACCCAGTAAAGCTTGTAATTTATATCAATGAGATCTTTGTAACAGTATAACAGACTACTTACATAAAATAATGCCTGCCAATAATATGTCTTAGTAAGATGATTTTGAAATGTTAGTTTTATGATCAAAGCTCTGTAGTTTAAAACATATAATTAAATGCAATACTGAGAGATGAACAAATAAACCTTCCTCAAAAGCCTGATGGATCATATTTGATACTTTTTAACACAATTTTTCTAAAAAAAAAATAAAAAAATAAATAAATAATGATGTATGGATAATCAAGTAAACCTAAGTTGCTTCAGTCCAGTAAGTGTTTATCTTGAAATATTACTAACAATATAAAAGTTAAAGTTACGTTTACTTTAAAAATCAGTAAAGATTTCACAGCAAAAAGACACGTGAACCCCGAGCTAAAGGTGGACATTTTTAAAATGATACTAAAAGGCCTTTTACTTGCTAAAGAGTATAAACTATCAATCCGCCGACAAAAGGCATGTAGTAGATTGTGTGCAACAGGTTTTTCAGCAAGGTTTTGATCGTGTTGATAATTTGCCTTAGAAGTTTGCTATATTGAATATAATACAGTAGGCTTTATAGGGTTAATTCTATTAAACTATTTTTATCAATACTTTTCAGTGTTGAATAAA

Function

symbol description
thsd7aa Acts upstream of or within several processes, including axon extension; glomerular filtration; and glomerular visceral epithelial cell development. Predicted to be located in cell projection and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in nervous system; neural tube; and pectoral fin. Orthologous to human THSD7A (thrombospondin type 1 domain containing 7A).
thsd7a Predicted to be involved in actin cytoskeleton reorganization. Located in plasma membrane.

NR:

description
thrombospondin type-1 domain containing protein 7A, partial

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00823197_00901936.mRNA True 6701 mRNA 0.51 36 822225 901936

Neighbor

gene id symbol gene type direction distance location
CI01000027_00808322_00809068 NA coding downstream 13157 808068 ~ 809068 (-)
CI01000027_00798826_00806532 ICA1 coding downstream 15693 798686 ~ 806532 (-)
CI01000027_00742700_00758723 COL28A1B coding downstream 63502 742631 ~ 758723 (-)
CI01000027_00701871_00719591 COL28A1B coding downstream 102634 701766 ~ 719591 (-)
CI01000027_00645077_00650763 SLC25A32B, SLC25A32 coding downstream 170940 644241 ~ 651285 (-)
CI01000027_01059994_01067301 RAB11A, RAB11AL, RAB25, RB11A coding upstream 156992 1058928 ~ 1067361 (-)
CI01000027_01072444_01076227 RAB25B, RAB25, RAA2A, RAB25A coding upstream 170079 1072015 ~ 1076227 (-)
CI01000027_01078554_01079951 MAPIP, ROBLD3-PS1, LAMTOR2.L, LAMTOR2.S, LAMTOR2 coding upstream 176500 1078436 ~ 1079951 (-)
CI01000027_01082314_01087880 UBQL4, XDRP1, UBQLN1, UBQLN4 coding upstream 180013 1081949 ~ 1088604 (-)
CI01000027_01111716_01114630 NA coding upstream 209742 1111678 ~ 1115560 (-)
G139294 NA non-coding downstream 199098 620674 ~ 623127 (-)
G139220 NA non-coding downstream 312564 487244 ~ 509661 (-)
G139354 NA non-coding upstream 82554 984490 ~ 984744 (-)
G139359 NA non-coding upstream 103233 1005169 ~ 1005411 (-)
G139360 NA non-coding upstream 105258 1007194 ~ 1007422 (-)
G139364 NA non-coding upstream 126333 1028269 ~ 1029875 (-)
G139373 NA non-coding upstream 142105 1044041 ~ 1044379 (-)
G139117 NA other downstream 584646 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 688423 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 703922 108119 ~ 118408 (-)
CI01000027_01241417_01245177 NA other upstream 342699 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 400098 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1220194 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1324689 2225781 ~ 2227499 (-)
G140118 NA other upstream 2599598 3509352 ~ 3584679 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010250 thsd7ab coding NC_007127.7 CM002900.2 46869010 ~ 47178134 (+)