CI01000027_00980123_00987611


Basic Information

Item Value
gene id CI01000027_00980123_00987611
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 979155 ~ 987884 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_00980123_00987611.mRNA
ATATAAATTCCCGTAAAACTCCCGTAAGTGCACTTACAGGAAGAGTCTATATGGTACTGCACATAGGCCTATTAGATAATACAGAATGTTAATTAAGTAAAGACCTAATGAGATCAAGCTGAAACTAAAATAAATATACTCAGCAAAAACATAGGATCTCGAGGCAAAATAAAAATTACATCGTCAAAATGATCTTGACAAAACTGGCTGTGTCCGAAAGCTTAAAACTGCTGCCTTCGGAGGACGTATTCCAAGGTAGGAAGGCATCAAGGCATGTTTGAATTCAATGTTAGCATCACTTCCTGTCTCCTGAGATACCTTCATTTGATCAATTTCTTAAGGCAGCATAGATGTATACTTCACTGCCTTTGACAGGCTATCCCACAATAATGTGTGTTCCAATAAAGATGGCATCTGAAAATTGCGGTTGGTGAACATTTTTGACCAACATTTTCCACTTTTGATTTCTAGCAAGAAATAACTATTGTAGTATTCAAATATTTGCTTCGTTATCACCAAAGCTCGCTCTGCTTTGTTAAACTGTCACGCTTCTTTAGAAGTCTGTCTGAAATCAGTTTCAGCAGGTACCTTCTTGCGCAAACGCTATCTGCAAAATCATTGCCTGATAAGACAGTGAGGCAACAAGTCAGCTGTCTAAGCTTTCCGACGCAGCCAGTCAACCAAATATGTCCCCTCTGGTCACTGTAGGAAACATTTGAGTTTGGAGGGTTTACAGCAGGGGTGCCCAGCCCTGTTCCTGGAGATCTACCTTCCTGCAGAGTTCAGCTCCAGCCCTGCTCAACACACCTGTCTGTAATTATCAAGTGCTCCTGAAGATCTTAATTAGCTGATTCAGGTGTTTATCAGGGTTGGAGCTAAACTTTGCAGGTAGGTAGATCTCCAGGAACAGGGTTGGGCACCCCTGGTTTACAGTTTCTCATACTGCTATGTACTAACAGCATCACTAGATGGCGTACTCCACACAAACACTAGCTGCAGGCTGCTTTGGGAAAGTATACAAGGAGAAGTATGGAGACACATGGGCTGCTGTGAAGAGAGTTCCTCTTAGCCACATCAGCAGACAACAGCTGGAGAGAGAATGCAAAGTCTATCATAACGCTCGGCATCACAATGTGGTAAAGCTTCTCGGTGATCCTTGGCTAAAAGACTCCAAGTGGAATATTCCTTTGGAGTTCATCTTTGGGGAGGATCTTGAGACGACCATCTTCAAAGTTCAGCTTTCTAAAATACAGCTGACGCCAGCAGTGAGAGCCATAATCATCACTGGTATGTGTGAAGGTTTACTTTATCTGCACAGTAAAGACATCGTCCACCAAGACCTCAAACCTGACAACATCATGGTGGAGCATCAAACCCATCGTGCAGTGATCATTGATTTGGGACTGGCTAAATTCTTTAGAAATGGACTCAGCTCTGCAGTAAACTTGGGCAATGAAGCGTACTCGGCTCCAGAGATCCTGCAGATGAGTGGAGTTCGTGACAAGCGATCAGACGTTTGGGCCATGGGTAAAATCATAGCTGAACTCTGCGCCAGGGTCAGGTTACCCACCCAATCTGTGTCTGCCATCAAGATTCGTGAAACTCTCAAAGACCAGCCGTACTCTATTGCAGTGTCCAAGATGGTGGAAGTCAATCCCAATAACAGAACTACAATGGCTGGAGTCATCGCAGACATCAGGAGAGCTGGTTCAGCTCAACAGACAGACATCAGACCAAGAGACATCCAGAGAGACATTACAAGAGACCTACCAAGAGACATCCCAAGAGACTTCCATAGAGACCTCCCAAGAGACTTCCAAAGAGACATCCCAAGAGACTTCCCAAGAGACTTCCAAAGGGACATTACAAGAGACATCACAGTGGCACATGGAAATGAAATCAGGCCAAATCAAATGTTGTGTCCACCAGCAGCTCCTGTTAATAAGATGGAGGGGAGAAGATCTCCTTTGTTATATTATCGACAGGATCCACCTCCACAAAGAGAGATGGGAAAGGCATTAGTCCCGGTTAAAGGTCAGGCTTTAAACAATCAGCTGTCTCTGATGTCATTTCCTTGCCCTCTCCCAGAAACCGGAAAAGTGACGCAGGAACGCTACATCGAGGGGAAAGGAGCTCTAGAATATAAAGAGATCATCACGAAGGGAGGGAGAATCGTTAAATATGAGAAAATGAGCAACGCATTGCTTCCATCACACCAAACCAATAATGTCCAGATAACCATGCACAAGCCAAGAAATGGTGTAATGACTCACTACCGCAACAATATGCAGAATGGCATTCAAACATATTCTATGGAAATCCGGAAGAATGGCAGAACTGTTGCCCGTGAAGAAGTCAATATTTATTCAACAAATTAAAAGTTCGATTTTGTTTTGGAACTAGATTACAGTATTCCATCTGAAATACAAAGAATATTCATTTTGATGGGTCTCTTTTAATATAACCTAGATGATTTTTGTTATCAATATGAATCATTAATATAGGATGTAAAATGTAACATCTAAGATTTAAAAAAAAAATTATGTAAGAAACGCTGAACTGCTTCAAGAGTATACAGTGTTAGCAGATAAAACATGCTGTTAATCTTCAATAATTTTGCCTATTTTGTGAACAATTTGAAGTGAAACTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_00980123_00987611.mRNA True 2651 mRNA 0.42 5 979155 987884

Neighbor

gene id symbol gene type direction distance location
CI01000027_00949578_00953698 NA coding upstream 24874 948721 ~ 954281 (+)
CI01000027_00909268_00918831 NA coding upstream 59942 908513 ~ 919213 (+)
CI01000027_00779517_00795032 NA coding upstream 183766 778954 ~ 795389 (+)
CI01000027_00765527_00776450 MIOS coding upstream 202392 765467 ~ 776763 (+)
CI01000027_00738809_00739296 NA coding upstream 238761 738004 ~ 740394 (+)
CI01000027_01033975_01037549 NA coding downstream 45019 1032903 ~ 1037922 (+)
CI01000027_01045587_01050470 MEX3A coding downstream 55508 1043392 ~ 1050863 (+)
CI01000027_01089832_01104918 NA coding downstream 101948 1089832 ~ 1104980 (+)
CI01000027_01119958_01123077 NA coding downstream 131546 1119430 ~ 1123099 (+)
CI01000027_01134221_01143363 NA coding downstream 144273 1132157 ~ 1143526 (+)
G138277 NA non-coding upstream 9988 968941 ~ 969167 (+)
G138267 NA non-coding upstream 44657 933743 ~ 934498 (+)
G138247 NA non-coding upstream 86034 855388 ~ 893121 (+)
G138234 NA non-coding upstream 157886 815994 ~ 821269 (+)
G138233 NA non-coding upstream 164349 814581 ~ 814806 (+)
G138309 NA non-coding downstream 16109 1003993 ~ 1004346 (+)
G138311 NA non-coding downstream 24993 1012877 ~ 1013154 (+)
G138312 NA non-coding downstream 27160 1015044 ~ 1015245 (+)
G138289 NA non-coding downstream 33637 1021521 ~ 1024940 (+)
CI01000027_01176638_01185141 NA non-coding downstream 192026 1175836 ~ 1185307 (+)
G138238 NA other upstream 147472 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 550479 390683 ~ 499760 (+)
G138057 NA other upstream 882428 93559 ~ 96727 (+)
CI01000027_00089337_00092919 NA other upstream 889278 88779 ~ 93085 (+)
G138290 NA other downstream 8086 995970 ~ 999181 (+)
G138436 NA other downstream 519077 1506961 ~ 1507816 (+)
G138515 NA other downstream 676524 1664408 ~ 1676860 (+)
G138915 NA other downstream 2496503 3484387 ~ 3486647 (+)
G138953 NA other downstream 2514188 3502072 ~ 3520065 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010249 NA non-coding NC_007127.7 CM002900.2 46826588 ~ 46830237 (+)