CI01000027_01045587_01050470 (MEX3A)


Basic Information

Item Value
gene id CI01000027_01045587_01050470
gene name MEX3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1043392 ~ 1050863 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01045587_01050470.mRNA
GTTTAAAAACCACGAATATTCGCCGCAAAATTTCAGTCATGATATGACACTCCATTTATTTAAGAATCATAACAGAACTGTTGTTGAAGATGCAGAAAGCAGCTGGACGGTGTTGTTTTCACGCGCACATGTGTTATCGTTCTGGCACGCCTCTCTTCACAACAGAATGCGATGAACTATGATGTTGAAGCCTAATATTTACGCATAAAATTATGTTTTGGATTATTCATTAGGAGTGAGTTGTGGGTTGCTACAAAGGAGTCTGAAATGCAACGGGATGGATGGATGGGTGGATGGATAGATGGATGGATGGTGACTGTCTCAGTGAGGCAGGGCATGGCAAGCTGTTTGAACATTTATTTTTATATTTCTCAAACTGCATCAGAATGCGCTGGAAATACTGACACATTATAAAAATATACATAAACTACTTTAAAAATAATAAATATTCTTCATAGTACAAACGTAATGTTCTATGTGTAATGCTGCAATCCTACGCTGGTGTTCACATTAATATTTTTATGAATGATGTTGATTTGCGGGTGATAACTCACTTGTTGAGCTTTGATAATAATTAAATTACACCATGCAAAAAAAAAAAAAAAATAGAAATTACCTTTTTTAAATGTCCCATAAATGTAACTGGATAAAAAAAATGAATAATAATAATAATAAATGAAAATAGTAAAATAATAGTGCAAAATCTTAAACAGAGTGCAAATAGCATTGGTAGTGCAAACCAATGTCTGGTTGGGACACTCACGGTTCGAGTCCGCCTTTTGCTGCGCTCACTCTTCTCCATTTTGCCATCATATATCACCTCAGAAAGGCATTTATTTTCAATAAAAATGAAAATAATGTTCTAAAAGTGGAAATAAACTGCCTAACAAGTGTTTAATAATATTAAAAGTATTTATTGGGTAGGGTTAGGGGAAGGTGTAGGGAGGGTTTTTATTCTCCCAAAAAGGCAGCATCCATTTAATAACTTTAATAAATATAATCATTTACACTCTATGATATTATTGCATCCTGTTAATGTACAAAAATACTGAGGTGCAAATAGTATCTGCATATAAAGTATAGCCTAGTAATAAAGTATATAAAGTAGAATATTTCACTTAGTGTAAATAGCATCTCCAGCTATTAATGTAAATAGCATCTATCACTAAGAAAATATGCTATTTTCACTTAGTGTAAATAGCATCTAATTTCTATTTACACTTAGCCAATATTAAAATGTGTATAATGTATACTGTTTTTATTGTAACAGTAAACAACATTTTAATTACTGTTTTAATTCTATTTTTAATAAATTATATATATATATATATATATATATATATATATATACACACTGCAAAAAAATAAATCCGTAAAATAACAGAAAAAGTACTGGCAGCTCATTACCTGGACATTATCCAGTAATTTTACGGACATTTCCATTAAACCTAAAACACAATGCAATGAAGTACAAAATTCTAAATACAGGTAAAACACCTGTAAAGAATAAATACAGAAAATTCTGTTAAATTAAAACAGTACATTGTGGCCTATTTGTATGGATTTGTATATATATATATATATATATATATATATATATATATATATAGTTAATTACATTATAATTATGGGACATTTAACAAAAGTGCACTTTTAACTGGATTAATAATACTACTACTAATAAATGAAAATATAAAATACAAAACAATCAAAATATGTATATATTTTATTCATATCTTTTTATAGTTGATTTTTAATTGTTTTTATTGTTAATTTTTTTTTTTTTTTTTACTTATTAAAAAGTGGAACAAAAACAGTTATTACAATTTTGTTTATTTGTTTATTGTTACTTAAACATAAAAATGAAACAGTATCGTCAAATAAAATTAAATAAAATAAAATATCGCTCAGTCATAAAAACAGATTGATTCTAGGGAATACATGCTGAAACGGCTTGCCATAGGCGGGGACTGAGCGAACCAGACGGGGTGGAGCATCAGTTAGCCTGGCCCTTCTCGGCGCAGACATCCTTGTGTCCCGTTCGCCTTCTGCGTATCGGAACCGGAGAAGGGGCTGGTCTGTGGGAGGGACTAGCGCAAAGGGGGGACTTGGACCAGGAGGGGGCGGGGTGGCGGCGAGGGTGCTGTTCCTCCAGTCTCTTACCAGTGTCTTTGTCTCACACTCTTTTGTTAGCCATGCCTAGCTTGCTGGTTCTAGCAGGGATCATGGAGAAAAATGGGGGCTACGGCGGGGATTTGGCCGGCTCCGGCTTCGGCAGCGAGGGTCTCCTAGTGCCACCCGAGGAGGAGGAGGATGATTCCCGTGCCCTTAGAGTTGCGCTGGGCCAACTGTCGCTGCTGGGTCTTGGAGAGGGCGAGGACGGGGCTCCTGCGGGTGGTGGTGGTGGAGGAGTTCAAGACAGGAGTAACAATAACCACCACAATCACATCCCATCGGAATCAGGGATGTTACAAGGGAAGAACAAGTTGTGCGCCCTTTACGAGAGCTCACCGACCGAAACCAAAGGACGGGGCTGCAACATAACGGAGTGCGTCCCCGTGCCAAGCTCCGAACATGTGGCCGAAATAGTGGGGAGGCAAGGGTGTGCTGCTCAAACTAAGTATGGAGCTGTCTTAACAAAGAAAAAGGGAGTGAAAATGGAACGCGTGTGCGCTCGCTGGATACAATGTAACAGTCAACGGTCTTTGTTGACTGGATACATTGTGTCATTCGCTCCTTCGCGCGCCTCTGTAGTTCCTGGGGGCTTTCATATGCAGCAGCACCACGTTGTTTTTGTCAGACAAAGAGGACTTGTCGGCACAGTATGCAGTATTCTGGAAAGCCATGTTGCATTTGGTCCTGGAGAGACAGACTATAAAGACTGTATTAGAGTCACGCCCCGTCTACCAGTACAACAGCCCTGCACTCAAAGCAGGGGGTCAGGAAGCCTCTACGGAGCACGCCGTCCATTGATTAAGAGTGTAATATCTTACCCAGATGAAATATGCACTAATAAACGTCCACAGCAATGGCTGCCATGCCTGTTAGGAGATGTGCTCCTGCAGCGAGAGGGACGATTCAGCGGCGGGAGGGAATCTGTGCTCCCCGCTGTCAGTGCTAGACGGTCCATCCAGTTAGCACATGGCACTCTTGTAGAGGAGACGTCATTCAGACAACAGTGGTTTTTAAGAGCTACGGTAATCACAGGTTGCAAAATCAAAGCTTTGCGTGCAAAGACAAACACCTACATCAAGACTCCCGTCAGAGGTGAAGAACCAGTCTTCCTCATCACCGGCCGCAAAGAGGACGTGGCCCTGGCCAGACGCGAAATCATCTCTGCTGCAGAGCACTTCTCCATGCTGCGGGCCTCCAGGAATAAGTTGGGCGTCTCTTTCAGTGGTTCGCCTCCTGCACCGCTACCTGGCCAGACCACCATACAGGTGCGGGTGCCCTACCGTGTTGTGGGTTTGGTGGTCGGACCCAAAGGCTCGACTATAAAACGCATCCAGCAGCAAACGTGCACTTACATCGTAACTCCGAGCCGCGACCGCGACCCCGTCTTTGAGATCACCGGCTCCCCCGGGAACGCCGAACGGGCTCGGGAGGAAATCGAGGCGCACATTGCTTTCCGCACGGGTGGCCTGCACGACCACAACAATGAGAACGACTGCTTGGGCCCTGACAGTGGCAACGGGGGTCTGGAGAGCCGCCTGCAGCAGGTGTGGGGGCTACAGGGGGCCCCGCGCAAGCCGCTTGCCAGCAGCTACCGCCAGAATTTCTCAGACACCATGGTCGGAAAGGGCACTCAAAGCTGGGGCGATCCCGACTATCCCAAACAGGTGGCTTACTATGCCCAGCAGCGCTCCAAAAGCTTTGGAGGCCTGCCGCTCCCTCTGACCAGACTGTCGCCGGGTCTGCCCGAACCGTGCGGCACCAGCAACTCCAACGCCGTCGGGTCTCCTCACGCCCAGGCGCGCCGCGCCCACAGCGAGCCCACCGCCACCACAGCCGCGTTCACCGGACGCCTCCCCGTGCCGGATTCACCACCTGCCGTGGCTCGGGACTGCATGACCTGTTTTGAGAGCAAGGTGACGGCCGCTCTGGTCCCGTGCGGTCATAACCTCTTCTGCATGGAGTGCGCCATCCGAATTTGTGAGCTAAACCATCCAGAGTGCCCTGTCTGCCACACCCTGGTCACACAGGCTATCCGAATATTCTCTTAAAGAGTCGTTTTTCTTTCGTTTTTGTGCTTTGTTTTTACTCTGTAGAATCAGTTTACTTTTAATCTTTTTTTATTTGGCCAGTATTCACTTTTTTATTTTTCAGAAAACACAAAACCAAAACAAGCAGATATTTTAGAACACACTGCTTGCTTTACTAAAAAAAGAGGAAGAAGTATTTTCAGATTTTTCTTTTATATGTACACATATATACATATATATTTTATAAAGGTTTTTTTAAAAATGGAAAGAACGTAGTTCTTAGCATGTTCATTTTTTGTTTTTTCTTTATTTTATTTAATTTTTTACTGGTGCTGTTTTTTCCACATGCTGTGTGTGGACAGTAACAGGAGAAATAATGTGAACATTTTACACTTTTCCTTTGCTGGGGAGGTA

Function

symbol description
mex3a Is expressed in brain; olfactory epithelium; optic tectum; and retina. Orthologous to human MEX3A (mex-3 RNA binding family member A).

GO: NA

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01045587_01050470.mRNA True 4616 mRNA 0.43 8 1043392 1050863

Neighbor

gene id symbol gene type direction distance location
CI01000027_01033975_01037549 NA coding upstream 5470 1032903 ~ 1037922 (+)
CI01000027_00980123_00987611 NA coding upstream 55508 979155 ~ 987884 (+)
CI01000027_00949578_00953698 NA coding upstream 89111 948721 ~ 954281 (+)
CI01000027_00909268_00918831 NA coding upstream 124179 908513 ~ 919213 (+)
CI01000027_00779517_00795032 NA coding upstream 248003 778954 ~ 795389 (+)
CI01000027_01089832_01104918 NA coding downstream 38969 1089832 ~ 1104980 (+)
CI01000027_01119958_01123077 NA coding downstream 68567 1119430 ~ 1123099 (+)
CI01000027_01134221_01143363 NA coding downstream 81294 1132157 ~ 1143526 (+)
CI01000027_01148208_01150893 NA coding downstream 97195 1148058 ~ 1150917 (+)
CI01000027_01153787_01158632 NA coding downstream 102924 1153787 ~ 1159001 (+)
G138289 NA non-coding upstream 18452 1021521 ~ 1024940 (+)
G138312 NA non-coding upstream 28147 1015044 ~ 1015245 (+)
G138311 NA non-coding upstream 30238 1012877 ~ 1013154 (+)
G138309 NA non-coding upstream 39046 1003993 ~ 1004346 (+)
G138300 NA non-coding upstream 58693 984457 ~ 984699 (+)
CI01000027_01176638_01185141 NA non-coding downstream 129047 1175836 ~ 1185307 (+)
G138350 NA non-coding downstream 163585 1214448 ~ 1214747 (+)
G138355 NA non-coding downstream 167790 1218653 ~ 1218878 (+)
G138357 NA non-coding downstream 170009 1220872 ~ 1225465 (+)
G138298 NA non-coding downstream 184996 1235859 ~ 1236549 (+)
G138290 NA other upstream 44211 995970 ~ 999181 (+)
G138247 NA other upstream 173817 855388 ~ 893121 (+)
G138238 NA other upstream 211709 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 614716 390683 ~ 499760 (+)
G138057 NA other upstream 946665 93559 ~ 96727 (+)
G138436 NA other downstream 456098 1506961 ~ 1507816 (+)
G138515 NA other downstream 613545 1664408 ~ 1676860 (+)
G138915 NA other downstream 2433524 3484387 ~ 3486647 (+)
G138953 NA other downstream 2451209 3502072 ~ 3520065 (+)
G140436 NA other downstream 3686535 4737398 ~ 4774262 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011044 FO082781.1 coding NC_007127.7 CM002900.2 46760625 ~ 46766153 (-)
bowfin (Amia calva) AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding CM030138.1 CM030138.1 16812785 ~ 16818439 (+)