CI01000027_01072444_01076227 (RAB25B, RAB25, RAA2A, RAB25A)


Basic Information

Item Value
gene id CI01000027_01072444_01076227
gene name RAB25B, RAB25, RAA2A, RAB25A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1072015 ~ 1076227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01072444_01076227.mRNA
ATGGGGTCTGATGAGGCCTACAACTTTGTTTTCAAAGTGGTTCTTATTGGAGAATCTGGTGTTGGGAAGAGCAACTTGCTGTCACGGTTCACCAAGAATGAATTTAATCATGACAGCCGGACGACCATCGGAGTGGAATTCAGCACAAGAACTGTGCAGCTAAATGGTCTCACCATCAAAGCTCAGATCTGGGACACAGCCGGACTGGAGCGGTACCGGGCCATCACTTCTGCATATTATCGAGGAGCAGTTGGAGCCCTACTAGTCTACGACATTTCAAAGCATTTGACGTATGAAAGTGCTGAACGCTGGTTGAAGGAACTCTACGATCACGCAGATACTCATATCGTAGTGATGCTAGTGGGCAATAAATCAGACCTGGCAGCAATACGGACCGTTCCAACAGAGGACGCAAAGGACTTTGCAGAAAAGAATGGTCTTCTGTATATGGAAACCTCAGCTTTGGGGTCAGTAAATGTCGAGGCGGCATTCAACACTGTGCTTGCAGAAATCCATAAAAAGGTGAGTAGCAAAGAAGTGACTCGAGGCTCTATCAATGCCGTGACATTGTCCCAACCCAAAGCAGATGACACACAGGTGGAGAAGAAGGTCTGCTGCAAGAACATGTGAAAGTACATTCTGGATGTTCAGAAGGACTTCACAAGGATCCTAATGGAGTTGTGAATTCAGCTTGTACAGTAGAGCCATCATTAAGAAAGAACCAGTATGGCAAAAAAGCAAAAGGAAATCCATTTCATTAACTGACATAGCCATATTTGTATTCATAAATATTATGTAGGCTTTTTAATGTTTGTCAGGTTTGACAAGGATTTTTTGACCTAATTTTTGGCCAATTTTTTTTTTTTTTTACTTTAAGTAGACGCTTTTATCCAAGGTGACTTACAAATGAAAAATACAACAAGCAATTCATCTTACTTAACATGCTGGAGAAATAACTTTATCACTGTAATTAGTATGTAAGATTGAGGAAAGAACCTATTTTTCCATTTACACATTTATTCACACTAGTTTTTAATTTGATTAATGAAGATAATTAAA

Function

symbol description
rab25a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Orthologous to human RAB25 (RAB25, member RAS oncogene family).
rab25b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Orthologous to human RAB25 (RAB25, member RAS oncogene family).
rab25 Enables myosin V binding activity. Involved in several processes, including positive regulation of cell population proliferation; positive regulation of epithelial cell migration; and pseudopodium organization. Located in cytoplasmic vesicle and pseudopodium.

NR:

description
RAB25, member RAS oncogene family

GO:

id name namespace
GO:0032402 melanosome transport biological_process

KEGG:

id description
K07906 RAB25; Ras-related protein Rab-25

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01072444_01076227.mRNA True 1059 mRNA 0.40 5 1072015 1076227

Neighbor

gene id symbol gene type direction distance location
CI01000027_01059994_01067301 RAB11A, RAB11AL, RAB25, RB11A coding downstream 4654 1058928 ~ 1067361 (-)
CI01000027_00823197_00901936 THSD7AA, THSD7A coding downstream 170079 822225 ~ 901936 (-)
CI01000027_00808322_00809068 NA coding downstream 262947 808068 ~ 809068 (-)
CI01000027_00798826_00806532 ICA1 coding downstream 265483 798686 ~ 806532 (-)
CI01000027_00742700_00758723 COL28A1B coding downstream 313292 742631 ~ 758723 (-)
CI01000027_01078554_01079951 MAPIP, ROBLD3-PS1, LAMTOR2.L, LAMTOR2.S, LAMTOR2 coding upstream 2209 1078436 ~ 1079951 (-)
CI01000027_01082314_01087880 UBQL4, XDRP1, UBQLN1, UBQLN4 coding upstream 5722 1081949 ~ 1088604 (-)
CI01000027_01111716_01114630 NA coding upstream 35451 1111678 ~ 1115560 (-)
CI01000027_01198110_01199285 RPZ4 coding upstream 121263 1197490 ~ 1200933 (-)
CI01000027_01204940_01206121 RPZ5 coding upstream 128242 1204469 ~ 1206319 (-)
G139373 NA non-coding downstream 27636 1044041 ~ 1044379 (-)
G139364 NA non-coding downstream 42140 1028269 ~ 1029875 (-)
G139360 NA non-coding downstream 64593 1007194 ~ 1007422 (-)
G139359 NA non-coding downstream 66604 1005169 ~ 1005411 (-)
G139354 NA non-coding downstream 87271 984490 ~ 984744 (-)
G139382 NA non-coding upstream 32323 1108550 ~ 1108876 (-)
G139405 NA non-coding upstream 83819 1160046 ~ 1160265 (-)
G139406 NA non-coding upstream 84165 1160392 ~ 1160644 (-)
G139409 NA non-coding upstream 134019 1210246 ~ 1210464 (-)
G139117 NA other downstream 834436 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 938213 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 953712 108119 ~ 118408 (-)
CI01000027_01241417_01245177 NA other upstream 168408 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 225807 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1045903 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1150398 2225781 ~ 2227499 (-)
G140118 NA other upstream 2425307 3509352 ~ 3584679 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010244 rab25b coding NC_007127.7 CM002900.2 46695777 ~ 46714052 (+)