CI01000027_01111716_01114630


Basic Information

Item Value
gene id CI01000027_01111716_01114630
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1111678 ~ 1115560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01111716_01114630.mRNA
AGCAGCATCAGGATACACAGAATTTTCACAGGAACTGGCATCTTCTCAATGGTCTGAGGATAGCACAGAATAAAACAATACATTAATACAAAACTGCATTTACAAAGAGGTTTAATGCTGTACAGAGGTGACATTAATGTATTTACATAGACGAAACAATAGTCAAATGTTATTATTATTATTTGTTTTTTTATTACCAAAAAATTAATTTTTGTTACATGTTTGACAGACAAAATAAAAACAGCAAATTATGTTAAGCCATTTCAAATCTTTTTATGGCTTTAAATTCAAGACTGCATAAAAGTTAGCTGAACAGTTGTTACTGTTACAATAACAACAACAACAAAAAAAGATAAAATACTTTTGATGGACACCCAGAAACAAGCAGCATTTTTAGTTCTAGTACTAGTAATGTAATGTAGTAATGTAAGTTTATAAGACAGAATGTAAAACTACATATGTGGAAAAAGTACCATGTGTGAACTGAAGGGAATCTGATTGCATTTTCGTATTTTATATTGTTAATTTTATATATATTTAACTGTACAATAAATTTTATATATATATATTTTCTTCATATAGTTAAGTTGCTCTCATGGTTGCTTCACCATGTTGTTGGCTTAATGTTTTACAGTTTTTCTCAGCCACTTTGGTACATTTCTTAGATCACAAATTGAAATTCTGAAAACTTCTTGTTCAACCTCCATTGTTTCTTTTGCAAATCAAAAACAATTTCTGGTAAATTCATGAAATTAATTATGTACAGTTGTCTGCTATTTCCTACATTACGTTTCAATTGCTTATAACATGTTGATCAAAATATATTTTTCTGGTTCTATGTTAATAATCTTCTGGGGTCAGGAATTCAACATATCAACGGCATCAATTAATTTTCCTGTGAATTCTGTGGACCAGAAAATACAATTACAGATGAAGCTTACCCTATCCTTCGTCTGTGTCTCTGAGAATGTCAGGTGTCTGGTGTATCAGCGCTCTTCTCTCACATTAAAAACTGTTTCTAGTTCTGATACCACTAAAGAAAGAAAGAAAACTTGGGACTTGGAACCACCGTACTTGAGACCACTAGACTTGGAGGTGCTGGGACCACTGGACTTGAGACCACTGGACATGGAGATGCTGGGACTACCAGACTGGAGATCACTGGACTCGGAGATGCTGAGACCACCGGACTTGAGACCACTGGACTTGAAGGTGCTGAGACCACTGGACTTGAAGGTGCTGGAACCACCGGACTTGAGACCACTGGACTTGGAGGTGCTAGGACCATCAGACTTGGAAGTGCTGGGACCACTGGACTTGAGACCACTGGACGTGGAGATGCTGGGACCACCAGACTGGAGACCACTGGACTTGAAGGTGCTGGAACCACCGGACTTGAGACCACTGGACTTGGAGGTGCTGGGACCATCGGACTTGGAAGTGCTGGGACCACTGGACTTGAAACCACTGGACGTGGAGATGCTGGGACCACCAGACTGGAGACCACTGGACTTGGAGATGCTGGGACCACCGAACTTGAGACCACTGGACTTGAAGGTGCTGGGACCACCGGAACTTGAGACCACTAGACTTGGAGGTGCTGGGACCACTGGACTTGAGACCACTGGACTTGGAGGTGCTGGGACCACTGGACTTGGAGGTGCTGGAACTACCAGACTTGAGACCATTGGACTTGGAGGTGCTGGGACCACTGGACTTGAGACCACTGGACTTGGAGGTGCTGGAACTACCGGACTTGAGACCACTGGACTTGGAGGTGCTGGGACCACTGGACTTGAGACCACTGGACTTGGAGGTGCTGGAACTACCAGACTTGAGACCACTGGACTTGGAGGTGCTGGGACCATCAGACCTGGAGTTGCTGGGACCACTGGACTTGAGACCACTAGACTTGGACATGCTGGAACTACGAGACTTGAGACCACAGGACTTGGAGGTGCAGGGACCACCGGACTTGAGACCACCGGACTTGGAGCACCGGCAGTGGTGTCTTCCAGGAGTGGCTTGTGAAGTTCTGGATCCTCCACCACCTGCAAAACCACAAAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106589829

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01111716_01114630.mRNA True 2069 mRNA 0.43 3 1111678 1115560

Neighbor

gene id symbol gene type direction distance location
CI01000027_01082314_01087880 UBQL4, XDRP1, UBQLN1, UBQLN4 coding downstream 23074 1081949 ~ 1088604 (-)
CI01000027_01078554_01079951 MAPIP, ROBLD3-PS1, LAMTOR2.L, LAMTOR2.S, LAMTOR2 coding downstream 31727 1078436 ~ 1079951 (-)
CI01000027_01072444_01076227 RAB25B, RAB25, RAA2A, RAB25A coding downstream 35451 1072015 ~ 1076227 (-)
CI01000027_01059994_01067301 RAB11A, RAB11AL, RAB25, RB11A coding downstream 44317 1058928 ~ 1067361 (-)
CI01000027_00823197_00901936 THSD7AA, THSD7A coding downstream 209742 822225 ~ 901936 (-)
CI01000027_01198110_01199285 RPZ4 coding upstream 81930 1197490 ~ 1200933 (-)
CI01000027_01204940_01206121 RPZ5 coding upstream 88909 1204469 ~ 1206319 (-)
CI01000027_01232167_01232844 NA coding upstream 115997 1231557 ~ 1234381 (-)
CI01000027_01241417_01245177 NA coding upstream 125777 1240478 ~ 1246267 (-)
CI01000027_01249889_01250572 RPZ coding upstream 133902 1249462 ~ 1250579 (-)
G139382 NA non-coding downstream 2802 1108550 ~ 1108876 (-)
G139373 NA non-coding downstream 67299 1044041 ~ 1044379 (-)
G139364 NA non-coding downstream 81803 1028269 ~ 1029875 (-)
G139360 NA non-coding downstream 104256 1007194 ~ 1007422 (-)
G139405 NA non-coding upstream 44486 1160046 ~ 1160265 (-)
G139406 NA non-coding upstream 44832 1160392 ~ 1160644 (-)
G139409 NA non-coding upstream 94686 1210246 ~ 1210464 (-)
G139410 NA non-coding upstream 95825 1211385 ~ 1211600 (-)
G139412 NA non-coding upstream 101310 1216870 ~ 1217069 (-)
G139117 NA other downstream 874099 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 977876 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 993375 108119 ~ 118408 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 186474 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1006570 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1111065 2225781 ~ 2227499 (-)
G140118 NA other upstream 2385974 3509352 ~ 3584679 (-)

Expression


Co-expression Network