CI01000027_01176638_01185141


Basic Information

Item Value
gene id CI01000027_01176638_01185141
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1175836 ~ 1185307 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01176638_01185141.mRNA
ATATTAAAACATAAAGCCAACATCATGGCAAAGCAACCATAGCAATTAACAATATGAAAAATGAAAATACAATCAGTTTTCTTTAAGTTTACACTGAGTGTTTTGAGTACTTCATTATTGAAAATGCTCCGCTATTGTTTCACAACCAGAAAGTGTCTAAATACTTTTTGCCTTCACTTTAAACAGTATATCTATTGTTTTATAATTGAAAACATTCTATAAATTAAGACCTGGTTTGCATTTGCGCTTTAAAATAAAGGATACTTTGTTGGATATTTTTGGTTAAATAATGCAAAGACATTCGTACATTTTAAGGGTGGCTTAAATGTATTTAAATGTAGCTCCAAATGTATTTAGGACCGGTTTTTTTTTTATGCAGCATGCAAATATACATCAAGCCAATAGATAATCACATGATATCAATGAGTTCTTATAGCTCCCAGACAGAACTCTACCTGTACCAGAACTAAACGCTGTTGTGATCGACACTTGTTTCTGGATGTCCATCAAGAATTGTGAGGTATTGTTTTATTATTTTATCTTTTTTTTTTTAACAATTATTTAAAAAGATCAGCTATATTTAATGTAGACTTAAATTTAAAGCCATGAAAAGTATAGATAGGCGTATTTTGCAATTTTCATTTTATCTGTTAAAATGTAACATTTGTAAAAAAAAAAACAAAAAACATTTGATCATAATTCAGCTATAACTCCTGTATAAATACATTCATGTCACCTCTGCACCGCATTAAACCTCTTTGTAACGTTGTGTACTAATGTATTGTTTTATTCTCCTCAGACAATGAAGAAAATGGGAGTTCCTGGCAAAATTATCTTTGTCTTGATACTGCTACTGCACAAGAGTATTCAACAAGAGACATTTAATGATCGGGCGACACTCAATGTCCCTGAAAATGAAATTGGTTGGATGAAAAATCTGGATGAAGAAAAGTTAATTTCTGACATCACTATTCCTGGTACCCATGACTCCTTGGCCCTTCATGGAGGACCGGCAGCAGAATGTCAGGCATGGTCACTACAGGACCAGTTAAATGCCGGGATACGATACTTCGACTTGAGGGTGTCTGGCTTTGGATTAAGAATTATGCATGGACCGGTTTCCCAACATACAACCTTTCCTGATGTTTTCAACACAATTAAGACATTTTTATCTAAATATAAAACTGAGACAGTGTTGGTCAGAGTTAAGCCTGTTTTTTTTCTTCTTAAGAACAAAGTTCCAGGTTTAGTTGAAAATGTGATTGAAAATGACATTAGCTGGGTTGCAGATGAAATACCAAAAATTGGTCAAGTAAGAGGAAAGATTGTATTTGTTCAGAAAAACAGCTTTGAGCTGGGTATCCCTCTATTTGAAACCGATGAACATAATGACTATATAGTAACTGATGTTGAAACAAAGATACAAAAGATTATTATGCATCTGACTGAGGCTACAGACGAACATAATAGAGCTGATAAAGTTGTTCTAAACTATTCAAGTGGCACAGGCTGGCCTAAAGTCAGGCTATTAAATACCCCCAAAAGTGTGGCAAGAAGTTTGGTCTCTATCTCCTGTGGGAAGTCCATCACCTCCGTCTTCAGCATGTCTCTGACAGTGTCTCAGGGTGAGGGTTTGACAGTCATCACTGTCTCCTCAAACCCAAAGAGCAAATGGCCCGTACTGTGTCAGATTCTGGCTTCTCTGTGCTGCAGTCCGGTCATTGTAGCTGGAATCGTGACTATTCTTGGAGCTAAGTTTCCCAGTCCTTGTCTGATGATCGTCAGAGGACTAGATATCATGATGATAGTGTTGTCGGTCCTTCAGCTCTGTGTGACGATCAGTTTCTGTGTTTTGACTGGGAAAGCTTTGTGCAAGAAGGATGAAGATGCAAAGGATCCAGAACTTTACAAGCCGCTCCTGGAAGACGTCACTGCCGTTCCTGCATGATAGAGAGAGAACATACAAAGCAACAAATATAAACAGTATATACACCGCCTCTCAGTATAGTACTGAGATGATTTAAAGCAGATTATACCTTGATACATGTTTATTCTTCTAAAGTGTTTTCCTTAAACATTTGGTTACTTCTAGAAAATAAGGGGTACTTTTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01176638_01185141.mRNA False 2114 mRNA 0.36 6 1175836 1185307

Neighbor

gene id symbol gene type direction distance location
CI01000027_01162273_01168513 NA coding upstream 7179 1162273 ~ 1168657 (+)
CI01000027_01153787_01158632 NA coding upstream 16835 1153787 ~ 1159001 (+)
CI01000027_01148208_01150893 NA coding upstream 24919 1148058 ~ 1150917 (+)
CI01000027_01134221_01143363 NA coding upstream 32310 1132157 ~ 1143526 (+)
CI01000027_01119958_01123077 NA coding upstream 52737 1119430 ~ 1123099 (+)
CI01000027_01413155_01416305 NA coding downstream 227794 1413101 ~ 1417658 (+)
CI01000027_01519267_01519711 AFP4, APOA2 coding downstream 333960 1519267 ~ 1519776 (+)
CI01000027_01543335_01543974 NA coding downstream 358028 1543335 ~ 1544229 (+)
CI01000027_01546280_01571152 NTRK1 coding downstream 360436 1545743 ~ 1571220 (+)
CI01000027_01572250_01574108 NA coding downstream 386586 1571893 ~ 1574410 (+)
G138289 NA non-coding upstream 150896 1021521 ~ 1024940 (+)
G138312 NA non-coding upstream 160591 1015044 ~ 1015245 (+)
G138311 NA non-coding upstream 162682 1012877 ~ 1013154 (+)
G138309 NA non-coding upstream 171490 1003993 ~ 1004346 (+)
G138300 NA non-coding upstream 191137 984457 ~ 984699 (+)
G138350 NA non-coding downstream 29141 1214448 ~ 1214747 (+)
G138355 NA non-coding downstream 33346 1218653 ~ 1218878 (+)
G138357 NA non-coding downstream 35565 1220872 ~ 1225465 (+)
G138298 NA non-coding downstream 50552 1235859 ~ 1236549 (+)
G138360 NA non-coding downstream 52442 1237749 ~ 1238319 (+)
G138290 NA other upstream 176655 995970 ~ 999181 (+)
G138247 NA other upstream 306261 855388 ~ 893121 (+)
G138238 NA other upstream 344153 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 747160 390683 ~ 499760 (+)
G138057 NA other upstream 1079109 93559 ~ 96727 (+)
G138436 NA other downstream 321654 1506961 ~ 1507816 (+)
G138515 NA other downstream 479101 1664408 ~ 1676860 (+)
G138915 NA other downstream 2299080 3484387 ~ 3486647 (+)
G138953 NA other downstream 2316765 3502072 ~ 3520065 (+)
G140436 NA other downstream 3552091 4737398 ~ 4774262 (+)

Expression


Co-expression Network