CI01000027_01413155_01416305


Basic Information

Item Value
gene id CI01000027_01413155_01416305
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1413101 ~ 1417658 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01413155_01416305.mRNA
GTTTAAAAACTATGAGTCGGTTGCACAGATGTCACATCACTCCAGTCATTTACCATGAGAGGATTGAACATGTGTTGGAAGATTATTGCGACACTGAGCTTGGACTGTTTTAAAGGTTCTCCGTCCTCTTCGCACAGGTCATCCACAAAGCTCGGCTCGAGTCAGGCCGCCAGCATGGAGAGCAGTTCTCTGACCGGTAGTCTGTCTCTGGGCTCTGATGTTCCTCACTGCCAGTGCTGCATCACCTACGAGGCCAGGCTGAAGCGTCTCTCCTGCGGCCATCTCTACTGCGACCCCTGCTCCGATCAGATCGTCAACCTGGCTTTTGAGGACATAGAAGGCCTGGCCGAATATCCCTGCCCAATGTGCAAAACCCTCCGTCACCTGGGAGGCTTCGTTCCAGCCCACAGCTACCATGGCATGACCCACTGTTCGCCCTTCGAAAATCAAAAGCAGCAGCTAGTTGAAGAGAAAGGAGGCCTGTGGGAATGATTGTGTCTTTTAATGCAGTGGTTCTCAACAGGACCCAGATTTTACATTGGACATCATGTTGAGAAACAAAACCTGTACCAAAAGATGCCAACAACAAAAGATATTGGAAACATTTTCTCCTCTCTTATAAAGTTTATATGCTTGCTTTTCTAACCGTATACACAATAACTCATTTTCAGGTCGTAATGCGCCAGTTGAGATCTACTGCTTTAAAGGGACTGGGCTTCATATCGTGGTTCAATATTCTGAATCTATTATCTGTAACATGAGAATACTTTGTTAAGTGAGACCTGCATCGTAAGTGAATCGTTTAATAGGTTTCATATGCTCTCCAATGCCATAATTGAGGAAAAGTAATAGTGTTTTATTCCATTAGTGGTGGAAGTTATTACACAAACTACTGGCTGTTCATATATTAGATTCAATTTGTATTTTGTGTTTTTAATGCCAGATGATATACACTAGTGAAGCTTACCTACGTGTGTATTAGAGCTATACGATTTTGGGTAAATTGAGAATCACGATTTTTTGGTTTCAAATAGAGATCACGATTCTCCCATGATTCTGAACAGAAAACTAAACAAACATGTAATTTACTAGAGGTTCTGACAGAATAATTACTGCAGTCTATTTAAAAATGTTTCATTAATATGAATTCATAATTTTTTTTAAAAATCTGTTTGAATGAATGATTCAATGACTTACTCATAAATATTTCACTTGTTTCATGATGAGTCTGTGTTTTTAAATGAATTTCTTGAATGATTAAGTGACAAATACATTTTTAAGTCACTTGTCGCCACCTACTGGCGTAAAAATGCAATGATATAATCGTTATTTGAAGCGCTACCAATGACATCAGTGTTTATATCGGAAATATAAACTTTTATCTCAGTACTTCTGTGATTATCTGAATATCTGTAACACAGAAATAATGATACTGTGTGGTTGAAAAGACGGTTTGAATGTTCCGGTGAGATTTTGTCAAAGGTTTAATAGACACAAATTGTCATTTAGGAATAAGGTCACGTGGGTGTTCAAGATCGCGATCTTTAATGATTAATCGTGCAGCTCTAGTGTTATCTGTAGGCCTATACAAGTATTTTTGTAATGAGTGCCATTGATGTAAACAATTATTTATTAAGTCAATTCATGAATTTTAAATGTTGTAATGCTTGTTGTAAAGTGGTCATGTTGTAAATACTATATTTTGATAAGATCTGAGTATGTCAGAACTATTGGGCTCATTTGTCATATATATTTTTAATAAGCCAGAATAACCATTATTAAGAAAAAACATCAAAAATTGTAGTTAAGAACTATAAGATGCATTTATTTATCTAAAATGCGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01413155_01416305.mRNA True 1845 mRNA 0.37 2 1413101 1417658

Neighbor

gene id symbol gene type direction distance location
CI01000027_01176638_01185141 NA coding upstream 227794 1175836 ~ 1185307 (+)
CI01000027_01162273_01168513 NA coding upstream 244444 1162273 ~ 1168657 (+)
CI01000027_01153787_01158632 NA coding upstream 254100 1153787 ~ 1159001 (+)
CI01000027_01148208_01150893 NA coding upstream 262184 1148058 ~ 1150917 (+)
CI01000027_01134221_01143363 NA coding upstream 269575 1132157 ~ 1143526 (+)
CI01000027_01519267_01519711 AFP4, APOA2 coding downstream 101609 1519267 ~ 1519776 (+)
CI01000027_01543335_01543974 NA coding downstream 125677 1543335 ~ 1544229 (+)
CI01000027_01546280_01571152 NTRK1 coding downstream 128085 1545743 ~ 1571220 (+)
CI01000027_01572250_01574108 NA coding downstream 154235 1571893 ~ 1574410 (+)
CI01000027_01767031_01767683 NA coding downstream 348949 1766607 ~ 1767863 (+)
G138415 NA non-coding upstream 34247 1378106 ~ 1378854 (+)
G138407 NA non-coding upstream 60193 1352704 ~ 1352908 (+)
G138376 NA non-coding upstream 117279 1295454 ~ 1295822 (+)
G138282 NA non-coding upstream 162491 1246723 ~ 1250610 (+)
G138360 NA non-coding upstream 174782 1237749 ~ 1238319 (+)
G138453 NA non-coding downstream 41637 1459295 ~ 1459570 (+)
G138454 NA non-coding downstream 42109 1459767 ~ 1459984 (+)
G138455 NA non-coding downstream 42582 1460240 ~ 1460456 (+)
G138430 NA non-coding downstream 43523 1461181 ~ 1462819 (+)
G138474 NA non-coding downstream 112063 1529721 ~ 1529926 (+)
G138290 NA other upstream 413920 995970 ~ 999181 (+)
G138247 NA other upstream 543526 855388 ~ 893121 (+)
G138238 NA other upstream 581418 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 984425 390683 ~ 499760 (+)
G138057 NA other upstream 1316374 93559 ~ 96727 (+)
G138436 NA other downstream 89303 1506961 ~ 1507816 (+)
G138515 NA other downstream 246750 1664408 ~ 1676860 (+)
G138915 NA other downstream 2066729 3484387 ~ 3486647 (+)
G138953 NA other downstream 2084414 3502072 ~ 3520065 (+)
G140436 NA other downstream 3319740 4737398 ~ 4774262 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011028 NA non-coding NC_007127.7 CM002900.2 46087489 ~ 46097432 (-)