CI01000027_01543335_01543974


Basic Information

Item Value
gene id CI01000027_01543335_01543974
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1543335 ~ 1544229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01543335_01543974.mRNA
AGTGAGAACGCACTGAAAGAAATCAATGGATTGTGGAAGCACACAGGTACGCTGCTAGATGTAAAGAGCAGAAAAAGGGTCTGCTCGGGTCCTGCCAGTAATTGTGGTCAGGGCACTATGACCTTACTGCTGTGTGTATGGAGACTCTCTGAGAGGGAGGCGGGGCACAATATGTATCCCTTATGGGAGGACGAGAGTCTGCAATCACAGCAGTCGGCCAACAACATCCATCCTCCTCCTGTACCCTTTCAGTACCAGAAAACCTTGAGTGTCTCTGAGCTGAAGATTCAAACCGCATGGAAAATTACAACAGGCACAGCTGGATCTGTAACACACAGAAGAAAAAAACCCACATGAGATCTCTTTAATATCAACCAAGAACAAAATGAGATTTGAAATGATGTAATTTAATGTTGCACATCTCTGGATTTTCATCGGTTTGAATTCGACAAGGTTCCTGCAATCTCAGTATGAGCTCAAGTATTTCTCATCAGATTTTAGAGTTATAATATCCACTTTCATTTTATAGCTTTATATTTGTACAGTATGTCAACAAAATTTTATTTGTGTCCATTAAATTTTTAAGAGCGATGCAATTGATTCTTAGAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01543335_01543974.mRNA True 612 mRNA 0.40 2 1543335 1544229

Neighbor

gene id symbol gene type direction distance location
CI01000027_01519267_01519711 AFP4, APOA2 coding upstream 23559 1519267 ~ 1519776 (+)
CI01000027_01413155_01416305 NA coding upstream 125677 1413101 ~ 1417658 (+)
CI01000027_01176638_01185141 NA coding upstream 358028 1175836 ~ 1185307 (+)
CI01000027_01162273_01168513 NA coding upstream 374678 1162273 ~ 1168657 (+)
CI01000027_01153787_01158632 NA coding upstream 384334 1153787 ~ 1159001 (+)
CI01000027_01546280_01571152 NTRK1 coding downstream 1514 1545743 ~ 1571220 (+)
CI01000027_01572250_01574108 NA coding downstream 27664 1571893 ~ 1574410 (+)
CI01000027_01767031_01767683 NA coding downstream 222378 1766607 ~ 1767863 (+)
CI01000027_01811625_01827803 RGL2 coding downstream 265528 1804199 ~ 1828182 (+)
CI01000027_01843365_01850501 FCGR2A coding downstream 299136 1843365 ~ 1850501 (+)
G138475 NA non-coding upstream 9913 1532970 ~ 1533422 (+)
G138474 NA non-coding upstream 13409 1529721 ~ 1529926 (+)
G138430 NA non-coding upstream 80516 1461181 ~ 1462819 (+)
G138455 NA non-coding upstream 82879 1460240 ~ 1460456 (+)
G138454 NA non-coding upstream 83351 1459767 ~ 1459984 (+)
G138491 NA non-coding downstream 37804 1582033 ~ 1582333 (+)
G138494 NA non-coding downstream 49046 1593275 ~ 1596468 (+)
G138508 NA non-coding downstream 88595 1632824 ~ 1647449 (+)
G138514 NA non-coding downstream 117656 1661885 ~ 1663849 (+)
G138515 NA non-coding downstream 121062 1664408 ~ 1676860 (+)
G138436 NA other upstream 35519 1506961 ~ 1507816 (+)
G138290 NA other upstream 544154 995970 ~ 999181 (+)
G138247 NA other upstream 673760 855388 ~ 893121 (+)
G138238 NA other upstream 711652 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 1114659 390683 ~ 499760 (+)
G138915 NA other downstream 1940158 3484387 ~ 3486647 (+)
G138953 NA other downstream 1957843 3502072 ~ 3520065 (+)
G140436 NA other downstream 3193169 4737398 ~ 4774262 (+)
G140440 NA other downstream 3236188 4780417 ~ 4785660 (+)

Expression


Co-expression Network