CI01000027_01546280_01571152 (NTRK1)


Basic Information

Item Value
gene id CI01000027_01546280_01571152
gene name NTRK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1545743 ~ 1571220 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01546280_01571152.mRNA
CAATAAAACATTTCAGATGATACCAAACATAACATATCACTCATACAGAACATTGCATATCACTTTTAGATAAACACTGGACGGTCCTAGAGGAGGAGAGAGAGGAATTGGGGAAATGGCACAATCCTTGCCCTTTGTGCATGCATGAGTCATGAGTTGTGTTTGCCTCATAAGCTCAAAGTTCATGTTCAGCTTTAACAGGTGGATCTATACGCTTCCACCTGCAGCTCACACTCACTTCTGCAAGTGTCACAGAGGTGTCTGGTGACCATTGCTCTCTCTCATCTCACACTCACACTCAACTAATGGACTGCTTTGCCCCTCCCCTCCTTTTCTCCATCTCGGACTGGGAGGTAGTGAGAGGAGGCAACAGCCCACCGTTCCCCTGGGCCCTGCTACACGGCTCAATAGCTCAGCTCCTGGATGGGATCATAACCCTGAGTGCTGGCCAAGAGAAGAGCCACTTCTCATCACGTCCAGAGTTCCTGCTGCAGGGTGGAGTTTCCTCCAGGAGAACAAACTCACTCGAACCCCACCATGGCTGAGTGTAGGGTGGCCCCGGTTGTGGTATTGCTTTTTGTCCTGGTTACACCAGCCCTGAGCGGATGCCCAAGCGCCTGCCGCTGTTCCTTTGCCATGCTGCAATGCCTAGAGCTGGACGGGATCACCAGCATCCCGGCGCTGGCGCCACAGGAGGGCGAAAACGTCACGGAAATAACTTTCCCAAAACAAGGGAATCCTTGGAAACTAATCAAGGACTGGAGGAAAGTGGCCTGGTACTTTGTGCTGCTGAGCTTCTCTTTAAGTGCTTTTAAGAGTGTCAGCTACATAGAGAATCAAGCAAACCTGGAGAACATCACAGACATAGACCTCGCCAACTACAGAGAACTGAAGAACCTAATTTTGAGGGACAATCAACTCACCTGCTCATGTGACATTTACTGGCTTCAGCAATGGCATAGAAAAAGACAAAGCGATATTGATTCTCAACAAAACTGTATTTACAATGGCAGCAGCGTTCAGCTGGATTCATTTGAAATGGATAACTGCAGTGTTCCTGAAGTCAAAATCAACCCACCGACACTGACCACTCAAGAAGGAGGAAACCTGACATTTACCTGTCTGGTGACTGGAGTACCAACACCGACTATCCGCTGGAGAACTGAGCACCTACAGTCCAGCTGGACTCTGCAGCAAGGAATCTGTGGATCAACTCTGGAGCTGGTTCTCCACATGAGGAGCGTGTCTTCTAGAGACAACCTACACAATCTCACCTGTGAGGCGGAAAATCGTGCTGGAATGGATGAAGCCACGGTGCAGCTGGATATCGAATTTCCAGTGCGGATCTTGTTTCTAAAAGACCCAGAACCACAACATCACTGGTGTTTCCCATTTGCTGTGGACAGCAATCCTCCCGCCACCATCAAATGGCTGTACAACAACACGCCTCTCATCGAAACCCGCTACACCTACACCGAACTGATCAGAGATGCAGCCGATGGCTCCATTCAACACGGCTGTCTGTTCCTCAACAAGCCCACCCATCTGAACAATGGCAACTACACACTCATCGTGGAGAATAAACTGGGTAGGGACCAGGGTACGGTAAACGGGAAGTTCATGGATAATCCTTTTGACCCCTTTGACCCAGAGGGCATCATTCCTGCTCCCACCAACCAATCAACAGAGACGGAGAAACTGGAGAGCAGAGTGTTTGGGGTGTCAGTAGCGGTGGGTCTTGCGGTGTTTGCGTGCACATTTCTGCTCATCATGGTTGTTGTCATCAATAAATGTGGACAGCACTCCAAGTTCGGCATCCACCTCTGGGGTCTCTGCGGTTATAGCTTGAGTGGGTTTTGTGATTTGAACGAGAGGCCTTTGCGTTTAATTCTGCTTCCTAAAACTGAGGTGATTTTCTTCGGATCAAGTTCGTCTGTTCTAGGCACTGAGGATGATCTGGCCGTGTCTCTCCGCTTCATGAACTTCGGGGCAAGTCCTCTATCTTCAGATGATGGCACACTGGATTCTGGCTTGTCCAGTTTTGTAGAGAACCCGCAGTATTTCTGTGGCATCATCAAAGACAAAGACATGTGTGTCCAACACATTAAAAGAAAAGACATTGTTTTGAAGTGGGAACTGGGTGAAGGAGCTTTTGGCAAGGTTTACCTGGCAGAATGTGCCAACCTTTGTCCGGATACTGACAAGATGCTGGTTGCTATTAAGACCTTGAAAGTCGCCAACGAGTCCACCCGACAGGACTTCCAGCGCGAGGCCGAGCTGCTCACGGTGCTGCAGCATGAACACATAGTGCGGTTCTACGGTGTGTGTACAGATGGAGAACCTCTGGCCATGGTGTTTGAGTACATGCGACACGGAGACCTCAACCGCTTCCTAAGGGCTCACGGTCCAGATGCTCGTATCTTGGACGAGATGAAGGTTCCTCCGATGGGTCAGCTGACCCTTCCTCAGATGCTCCACATCGCAGCTCAGATTGCCTCGGGCATGGTGTACCTCGCTTCCCTTCATTTTGTCCACAGAGATCTGGCCACCAGGAACTGTTTGGTTGGAGAAGGGCTGGTGGTGAAGATCGGGGATTTCGGGATGTCAAGAGACATTTACAGCACTGATTACTACAGGGTAAAACATGTCATTTCAATATCAATGGTGTCACTCCAAAAACTGACAAAAGTGACCGATCATTGGTTTTTGTATATTTACCCACAGCAGAGATGTTTGGTTGTAATTTGTTCTCATTCACGTCATCAGGTCGGTGGGAGGACGATGCTGCCCATTCGCTGGATGCCGCCAGAAAGCATCATGTACAGGAAGTTCACCACAGAGAGTGATATTTGGAGCTTTGGAGTGGTCCTTTGGGAAATCTTCACCTATGGCAAACAACCATGGTATCAGCTATCCAACAGTGAGGTACAGTCCACATTTCATGCTCAGAATTAGTGTCAACCATTTATGGCTGCACAATTGTACCTATTTAAATGTCAAACTCATTCATTGTTAAGTGTTTA

Function

symbol description
ntrk1 Predicted to enable neurotrophin binding activity; neurotrophin receptor activity; and transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within defense response to bacterium; inflammatory response to wounding; and neutrophil mediated immunity. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in axon. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Alzheimer's disease; hereditary sensory neuropathy; hereditary sensory neuropathy type 4; and schizophrenia. Orthologous to human NTRK1 (neurotrophic receptor tyrosine kinase 1).

NR:

description
Ntrk1 protein

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K03176 NTRK1, TRKA; neurotrophic tyrosine kinase receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01546280_01571152.mRNA True 3023 mRNA 0.49 15 1545743 1571220

Neighbor

gene id symbol gene type direction distance location
CI01000027_01543335_01543974 NA coding upstream 1514 1543335 ~ 1544229 (+)
CI01000027_01519267_01519711 AFP4, APOA2 coding upstream 25967 1519267 ~ 1519776 (+)
CI01000027_01413155_01416305 NA coding upstream 128085 1413101 ~ 1417658 (+)
CI01000027_01176638_01185141 NA coding upstream 360436 1175836 ~ 1185307 (+)
CI01000027_01162273_01168513 NA coding upstream 377086 1162273 ~ 1168657 (+)
CI01000027_01572250_01574108 NA coding downstream 673 1571893 ~ 1574410 (+)
CI01000027_01767031_01767683 NA coding downstream 195387 1766607 ~ 1767863 (+)
CI01000027_01811625_01827803 RGL2 coding downstream 238537 1804199 ~ 1828182 (+)
CI01000027_01843365_01850501 FCGR2A coding downstream 272145 1843365 ~ 1850501 (+)
CI01000027_01850735_01853042 NA coding downstream 279515 1850735 ~ 1853513 (+)
G138475 NA non-coding upstream 12321 1532970 ~ 1533422 (+)
G138474 NA non-coding upstream 15817 1529721 ~ 1529926 (+)
G138430 NA non-coding upstream 82924 1461181 ~ 1462819 (+)
G138455 NA non-coding upstream 85287 1460240 ~ 1460456 (+)
G138454 NA non-coding upstream 85759 1459767 ~ 1459984 (+)
G138491 NA non-coding downstream 10813 1582033 ~ 1582333 (+)
G138494 NA non-coding downstream 22055 1593275 ~ 1596468 (+)
G138508 NA non-coding downstream 61604 1632824 ~ 1647449 (+)
G138514 NA non-coding downstream 90665 1661885 ~ 1663849 (+)
G138515 NA non-coding downstream 94071 1664408 ~ 1676860 (+)
G138436 NA other upstream 37927 1506961 ~ 1507816 (+)
G138290 NA other upstream 546562 995970 ~ 999181 (+)
G138247 NA other upstream 676168 855388 ~ 893121 (+)
G138238 NA other upstream 714060 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 1117067 390683 ~ 499760 (+)
G138915 NA other downstream 1913167 3484387 ~ 3486647 (+)
G138953 NA other downstream 1930852 3502072 ~ 3520065 (+)
G140436 NA other downstream 3166178 4737398 ~ 4774262 (+)
G140440 NA other downstream 3209197 4780417 ~ 4785660 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012524 NA coding CM030138.1 CM030138.1 20703429 ~ 20742998 (-)