CI01000027_01572250_01574108


Basic Information

Item Value
gene id CI01000027_01572250_01574108
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1571893 ~ 1574410 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01572250_01574108.mRNA
ATATAAAAAGCTAGTCAGCCAAATATAATGCAACGCAAAGCAGCATATTTATTTATACTAATGTTCTTATATATAGAATACATAAGACTTTTTTCAACTTTAACAATCTGCAAAATATCTCCTTAAATGTTTCACTGAAGGAAAAAAAAAAACAGATCAAGGGGGCGAGTAAATGAATTTTCATTTGGCAGTAAATGACTCCTGCAATGTTTACCAGCAATGACAGCAGTGATTTAGACTGTCTGAAGGCATCAGTGCTGGTCAGTGAGCTAAAGCAAACAGACAGAGCTATTCCCAACCTTCATCGTGATGTGAACATCCATTTTGGACTGGATCAGACTGGGCTCTTAAGCACTTATGAACGAGCAGATCAATAGATTTTTCGGTTCCAGAGTGATCCAGACCTTTCAGATTAGGCACCAAAAAGTGGACCCTGGTGTGACCACAACTGCACTATTATGCTGGAGAGGCCTCTCTTCTTTCAACAGAGAGGCCATTGAGTGTATCACGCAGGGACGAGAGCTTGAACGGCCACGTACCTGCCCGAAGGAAGTGCACCTCCTTATGCAGGGCTGCTGGCAGAGAGAACCGCAGCAGAGGCTCGTCATCAAGGACATCTACAACCGCCTCGTGGCCCTCGTCAAGAACCCGCCTGTCTATCTGGACATCCTGGAGTAGTAGCACATGGTCGGCCCTGCATGGAAAAGACATGCTTCTGATAGCAGGTTGTTTGGGCTGAGAAGGAAAGTCATTAGTGGGTTATGGACAGACAGAATTCACGAACTGTCTCAGATGTGCAGTATGAACATTTCGCGGTGTTTGTTGATGTGTAAGATTGTGTCCATGCGTTTAAATTTGAAATGGACTGAGAAAAAGAACAGTGGATACTTTGAACATGCATTAGTGGAAATTGCTCATGACTCAACCCTGAAGAGACACTAGATTTTCTATACGAGGATACTGATGTCAAGGCCTTGTAA

Function

NR:

description
Ntrk1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01572250_01574108.mRNA True 980 mRNA 0.43 2 1571893 1574410

Neighbor

gene id symbol gene type direction distance location
CI01000027_01546280_01571152 NTRK1 coding upstream 673 1545743 ~ 1571220 (+)
CI01000027_01543335_01543974 NA coding upstream 27664 1543335 ~ 1544229 (+)
CI01000027_01519267_01519711 AFP4, APOA2 coding upstream 52117 1519267 ~ 1519776 (+)
CI01000027_01413155_01416305 NA coding upstream 154235 1413101 ~ 1417658 (+)
CI01000027_01176638_01185141 NA coding upstream 386586 1175836 ~ 1185307 (+)
CI01000027_01767031_01767683 NA coding downstream 192197 1766607 ~ 1767863 (+)
CI01000027_01811625_01827803 RGL2 coding downstream 235347 1804199 ~ 1828182 (+)
CI01000027_01843365_01850501 FCGR2A coding downstream 268955 1843365 ~ 1850501 (+)
CI01000027_01850735_01853042 NA coding downstream 276325 1850735 ~ 1853513 (+)
CI01000027_01865502_01875022 HPN coding downstream 291092 1865502 ~ 1877374 (+)
G138475 NA non-coding upstream 38471 1532970 ~ 1533422 (+)
G138474 NA non-coding upstream 41967 1529721 ~ 1529926 (+)
G138430 NA non-coding upstream 109074 1461181 ~ 1462819 (+)
G138455 NA non-coding upstream 111437 1460240 ~ 1460456 (+)
G138454 NA non-coding upstream 111909 1459767 ~ 1459984 (+)
G138491 NA non-coding downstream 7623 1582033 ~ 1582333 (+)
G138494 NA non-coding downstream 18865 1593275 ~ 1596468 (+)
G138508 NA non-coding downstream 58414 1632824 ~ 1647449 (+)
G138514 NA non-coding downstream 87475 1661885 ~ 1663849 (+)
G138515 NA non-coding downstream 90881 1664408 ~ 1676860 (+)
G138436 NA other upstream 64077 1506961 ~ 1507816 (+)
G138290 NA other upstream 572712 995970 ~ 999181 (+)
G138247 NA other upstream 702318 855388 ~ 893121 (+)
G138238 NA other upstream 740210 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 1143217 390683 ~ 499760 (+)
G138915 NA other downstream 1909977 3484387 ~ 3486647 (+)
G138953 NA other downstream 1927662 3502072 ~ 3520065 (+)
G140436 NA other downstream 3162988 4737398 ~ 4774262 (+)
G140440 NA other downstream 3206007 4780417 ~ 4785660 (+)

Expression


Co-expression Network