CI01000027_01610574_01630928 (SMG5)


Basic Information

Item Value
gene id CI01000027_01610574_01630928
gene name SMG5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1610441 ~ 1630928 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01610574_01630928.mRNA
ATGAGCGGACCGGGTCAGGACAGCGAGCCAGAGGCCAAAGTGCTTCATATTAAACGGCTGTACAGGGCTGTTGTGGAAACGGTGCATAAGTTGGATATTATAATCAGCGGCAAGTCGTCGTATAGGGAGGTCTTCAAACCTGAGAATATCAGCTTGAGGAACAAATTGCGGGAACTTTGTGTAAAGCTGATGTTCCTGCATCCTGTGGACTATGGACGCAAGGCAGAAGAGCTGCTGTGGAGGAAGGTCTACTATGAGGTCATTCAGGTCATCAAGACCAATAAGAAGCATATTCACAGCCGCAGTGCTCTGGAGTGCGCCTACAGGACTCATCTGATCGCTGGGGTGGGCTTCTTTCAGCACCTGCTGCTCTATATCCAGTCACACTATCAGCTGGAGTTACAGGACTGCATCGACTGGACACACGTCACTGACCCACTCATCGGTCGTAAGAAACCAGTCTCAGCCACCCCTAAAGAGATGGAGTGGGCCCAGATGGCGTGTCACAGATGTCTTGTGTACTTGGGAGATCTCGAAATTAAACCGTTTAATGTTTATGAAGCGCGGTACCAAAACGAACTGGCCGGAGTGGAGGCAGAGCAGCTGGCGGAGCGCTTTTATCACCAGGCCCTGTCTGTCGCACCTCATGCCGGCATGCCGTTTAATCAGTTGGGTACGCTTGCTGGAAGTAAATTTTATAATGTGGAGGCTACTTACTACTACTTACGCTGTATTCAGTCGGAGACACCCTTCGACGGCGCTTATGGGAATTTAAAGCGTCTGTTTGACAAGGCAGCCAAGATGTACCACCAGGTGAAGAAACAAGAGATGAAGAAACTTTCACCATCACGCCAGAGAGCCTGTTGCAGCCCAAGAACAGGTGAGAGCTTCAACCCGTTTAATGATATAAAAAATCCCCATCCCTCCCCTGAAAGTCTGATGGAGACGGAGCTGACGTCACTGTGCCAGTCTGTGCTGGAAGACTTTAACCTGGTGCTGTTCTACCTGCCCCTTCCTACTCACGGCAGCCAGTCAGCCAGCGAGGAGGAGGAAGAGCACGACTCAGTCTGTTCTGTGCTTCCTGACAGCCTCATATTCAAGATGGTGGTGACTTGCCTTATGGTGGTGCACAGCCTGAAAAGAGGGGCTTCAAAGCAGTACAGTGCCTCCATCGCTTTCACGTTGGCTCTGTTCTCCCATTTGGTCAATCATGTCAACATTCGACTGCAAGCTGAACTGGAGGAGGGAGAGAGTGACGTCCCACCCCTGCGCACTGATAACACTGATGACGCTGATGCCAGAGATCACAGTGGTGCTGCTCTCTCAGAGAAGAGGACCCTACAGAACGGCTCCCTGGAAGAGGACGATGACGAGGAGAAGGAGAATGAGGAAGGCGTGACTAAGGGGAACGGAAGTACAGTGGGGAGGAAGAAAAGCCTGGAGAAGAAGAGATCAGCTGAGGAGAAGCAAAAACAGAAGAGGAAGTTCTCACGGCTCTCTATGCTTCGCCGCAGACGCTGCGCTCACAAGGAGGATGAGAGCGACCTGAGCGAGGGATTTGAGAGTGACGAAGAAGAGGACGAGGAAGGCGGCGGTCCGGTCGACGGTCTGGGAGCCACTAGGGTCCAGATGAACTCTTTAGGAAGGGAAGGACGGAAAGGACCACTGGCAGGGGATGGCAGCTGGGAAAGTGGCTCAGAGGAGGACGAGGGCGGTACTGCTTTTGACGTCGAGACGGATTCTGACATGAACAGTCAGGAATCTCGTTCGGACCTGGAAGACATGGAGGATGCCGAGAATGTGCCACAACAGCAGCAACAAGAGGAAAATGAGCAGCCGCAACCATCTAGAGAGGAAAACTCGACCCCTCCAGTAACCAACGGCCCTTTAGTATCTAATGATGCCAGCATCAGCAGTAACTTGCAGGCCATGTCCTCTCAGCTCTTCCAGGCAAAACGCTGCTTTCGGCTCGCCCCCACCTTTAGCAATGTACTGCTCCGCCCTGCACCTGCCACTAACCCCACCCAAGACTCAACCCCTGCCCCAATACAAGAAGCCACACCTCCTACCGGAGAAACGCCGAGACAAATTAATCCAGAGATCGCTAATGGAACTAACGACAATGATCCTGACTCTGATTCTGAGGGCAGTGAGCACAGCAACCACTCGTTTCCCAGTGAGAAAACCCTTTCTGAGCGACTGGAGATTCTGACCAATCAGGGTCTCATCCAGGTGGTGAAGGTCTTTTTGGATTGGCTGAGGACGAACACTGATATCATCCTCATGTGCGCTCAGAGTTCTCAGAGCTTGTGGAACAGACTCTCAGTGCTGCTTAATTTACTTCCTGAGGGCAGCAAGATATTAGAAACAGATTTAGGTTTGAATAAGGATGTAACAGAACTCCTGAATGAGTGTGAGCAGTCTAGTTTGGTCCAGACGCTGCTGTTGCCCGAGGATCTGGCCCTCCGCCACCTTCCTGCCCTCAGCGTAGCCCATCGACGCCTGGACTTCACTAGCCAGAGACCACCACTTACCCCTCTGGATGAGTGTGTGGTGCGCGTGTGCTGCATTCGCAGCTTTGGACACTTCCTCACAAATCTCCAAGGCAACGTGTTGCACTTCAACCCAGAGGCGGGCATCTTCACCAGCATCAGCCAATCAGAGCAGGAGAATCTGATTCAGCAGGCCAAGGCCCAGTTCCGCATGGCGGAGGAGGAAGCTCGCAGAAACCGGCTCATGAGAGATATGGCCCAGCTGCGCCTACAGTTGGAGGTCTCTCAGCTGGAGGGCAGTCTGCAGCAGCCCAAAGCTCAGTCCTCCATGTCTCCTTATCTGGTGCCAGATACCGGTGTTCTCTGCCAGCACCTGGGGCTGCTTAGACAGCTGGCTGCCAGCGGCTGCTTCATCATAATCATCCCTCGCACAGTGATTGATGGTCTGGATATGCTGAAGAAAGAGAACTCAGGAGCGAGAGATGGCATCCGGTTTCTTGAGACAGAGTTTCGGAAAGGGAACAGGTACATCCGCTGTCAGAAAGAGTCGGGAAAAAGCTTTGAGAGGGACAAATTGAAGCGACAGGACATAGAAGCCTGGCACCTGTATAAGATGGTGGACAGCTGTCGCCAGCTGACGGGATCTCAGAGCAGTGGAGATGAAGACACCGCTGGCATGGTGACCATTTTGACAGGACACTCATTGGAGGAGCTGACTGAACGGTCAGCTTCCATGAAGGTGGCTGTCCAGGCGGTGGCAGCAGCAGGCATGGAGCTGAAGAACATCACCGAGTTCTACCGGCAGTGGAAAGAGATGGGCTGAGAGACGGCGTGGGACGCAGGAGGTCGGCTCGGCGTTCGGCTGATCGCACACTCACTCCCCCTCTCTCTCAATCTCTCGCTCTCTCTCTCCAGCTTTACTGCTCTGTCTGTATCTGTGTCTTCAGGAAAAGAAA

Function

symbol description
smg5 Predicted to enable telomerase RNA binding activity and telomeric DNA binding activity. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm. Predicted to be part of telomerase holoenzyme complex. Orthologous to human SMG5 (SMG5 nonsense mediated mRNA decay factor).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11125 SMG5, EST1B; protein SMG5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01610574_01630928.mRNA True 3448 mRNA 0.53 22 1610441 1630928

Neighbor

gene id symbol gene type direction distance location
CI01000027_01587854_01598407 NA coding downstream 11995 1587738 ~ 1598446 (-)
CI01000027_01499088_01500312 RBM8A coding downstream 108413 1499040 ~ 1502028 (-)
CI01000027_01466387_01475758 OTUD7B coding downstream 134683 1465547 ~ 1475758 (-)
CI01000027_01420180_01439837 MTMR11 coding downstream 170604 1420122 ~ 1439837 (-)
CI01000027_01361532_01381534 SV2A coding downstream 227675 1361288 ~ 1382766 (-)
CI01000027_01651455_01676579 SYNGAP1B coding upstream 19883 1650811 ~ 1676579 (-)
CI01000027_01775507_01793407 PHF1 coding upstream 144567 1775495 ~ 1793407 (-)
CI01000027_01799404_01801967 NA coding upstream 168130 1799058 ~ 1802091 (-)
CI01000027_01832797_01839912 DNASE2 coding upstream 201568 1832496 ~ 1839912 (-)
CI01000027_01855521_01856799 NA coding upstream 224424 1855352 ~ 1856856 (-)
G139553 NA non-coding downstream 1373 1608378 ~ 1609068 (-)
G139487 NA non-coding downstream 53271 1551085 ~ 1557170 (-)
G139498 NA non-coding downstream 147129 1462993 ~ 1463312 (-)
G139457 NA non-coding downstream 147616 1461180 ~ 1462825 (-)
G139514 NA non-coding downstream 276903 1333312 ~ 1333538 (-)
G139567 NA non-coding upstream 212448 1843376 ~ 1843598 (-)
G139568 NA non-coding upstream 213076 1844004 ~ 1844342 (-)
G139569 NA non-coding upstream 214309 1845237 ~ 1845494 (-)
G139486 NA non-coding upstream 234256 1865184 ~ 1870870 (-)
G139461 NA non-coding upstream 245778 1876706 ~ 1877374 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 290280 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 363464 1240478 ~ 1246267 (-)
G139117 NA other downstream 1372862 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1476639 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1492138 108119 ~ 118408 (-)
CI01000027_02119227_02124423 NA other upstream 491202 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 595697 2225781 ~ 2227499 (-)
G140118 NA other upstream 1870606 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 2156450 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 2291468 3922242 ~ 3931033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010223 smg5 coding NC_007127.7 CM002900.2 45693413 ~ 45734213 (+)
bowfin (Amia calva) AMCG00012507 smg5 coding CM030138.1 CM030138.1 20168155 ~ 20178964 (-)