CI01000027_01799404_01801967


Basic Information

Item Value
gene id CI01000027_01799404_01801967
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1799058 ~ 1802091 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01799404_01801967.mRNA
ACAATCAGCAGTGCACGAGGGCTTTTGCCTCAGGCTGATAAGAAACTCAGCACCCCGTAGTACTTCTAAAACAAAACAGTTCAAGTTAAAACAAACACAAAGCAGGTCAATCGGAGAGCAACAGATGAACGTATTTGAATTTTATGAACTTTCAGCCTGGCCTCTTTATATCACCACGGTTAGTTATGTAATAGATCCCCTTCAAATGAACATTTGCAGCTTTTTACTGTCTCCTTCAGTCAAACCAAAAGCAGCTTTTCTAAGAACCAAACAACTGTCGCTTCAGTTTCCTTATGATTATATGTCTCAAGAGGACGAGGCCTTCAGCACTTCAAGTGAAAGGGTCACAACTCAGCTGAATATCCTGTTTCAAGTTTTTAATCCACAAGTGAAAGCTGATCTAACACGAAACACCAACACATTCACCATAGAAACGCATTATAAGGCTGATCTGGAGGTCCGTCGACCTCTGGCTGTAGGGGTCGATATCCAATGAGGGGCACTTCTCTCGGACCCACTCCTGGCAGCTCGACTCCAGATGTTTTCATACTACGGGGGAGCATGATGGTGCCGCTGGCCCAAAAACAAAAACCCAGGTCATTTGGAGAGGAACAAGCAGCTCAACAGGGAGTCATTCGCCCTGGTAGATCATTTGTTTTCATCATTTACATTTCCCTTTGCCAAGAGACAACTTCAAATTTGAATTCAGGCCCCTCCCTTGCCTTGTCTCCTTTCCCTCACTGGTATTTATATTAGCCTGCAGATAGAGATCTCTTTCAGGAAGAGAAGGATGGAAAGAGCGCAGCTCAAAACTCAGTGCAATTGTCACAAACAGCAATAAA

Function

NR:

description
hypothetical protein cypCar_00046081, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01799404_01801967.mRNA True 842 mRNA 0.44 3 1799058 1802091

Neighbor

gene id symbol gene type direction distance location
CI01000027_01775507_01793407 PHF1 coding downstream 5651 1775495 ~ 1793407 (-)
CI01000027_01651455_01676579 SYNGAP1B coding downstream 122479 1650811 ~ 1676579 (-)
CI01000027_01610574_01630928 SMG5 coding downstream 168130 1610441 ~ 1630928 (-)
CI01000027_01587854_01598407 NA coding downstream 200612 1587738 ~ 1598446 (-)
CI01000027_01499088_01500312 RBM8A coding downstream 297030 1499040 ~ 1502028 (-)
CI01000027_01832797_01839912 DNASE2 coding upstream 30405 1832496 ~ 1839912 (-)
CI01000027_01855521_01856799 NA coding upstream 53261 1855352 ~ 1856856 (-)
CI01000027_01966516_01972432 NA coding upstream 164153 1966244 ~ 1973211 (-)
CI01000027_02119227_02124423 NA coding upstream 317040 2119131 ~ 2125142 (-)
CI01000027_02147653_02152768 NA coding upstream 345466 2147557 ~ 2153486 (-)
G139553 NA non-coding downstream 189990 1608378 ~ 1609068 (-)
G139487 NA non-coding downstream 241888 1551085 ~ 1557170 (-)
G139498 NA non-coding downstream 335746 1462993 ~ 1463312 (-)
G139457 NA non-coding downstream 336233 1461180 ~ 1462825 (-)
G139514 NA non-coding downstream 465520 1333312 ~ 1333538 (-)
G139567 NA non-coding upstream 41285 1843376 ~ 1843598 (-)
G139568 NA non-coding upstream 41913 1844004 ~ 1844342 (-)
G139569 NA non-coding upstream 43146 1845237 ~ 1845494 (-)
G139486 NA non-coding upstream 63093 1865184 ~ 1870870 (-)
G139461 NA non-coding upstream 74615 1876706 ~ 1877374 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 478897 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 552081 1240478 ~ 1246267 (-)
G139117 NA other downstream 1561479 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1665256 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1680755 108119 ~ 118408 (-)
CI01000027_02226447_02227499 NA other upstream 424534 2225781 ~ 2227499 (-)
G140118 NA other upstream 1699443 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 1985287 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 2120305 3922242 ~ 3931033 (-)

Expression


Co-expression Network