CI01000027_01811625_01827803 (RGL2)


Basic Information

Item Value
gene id CI01000027_01811625_01827803
gene name RGL2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1804199 ~ 1828182 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01811625_01827803.mRNA
ATATAAATTTATGTCTGTGGTTCACCTGTGTCAGTGGCTCACAGTGTCAGCTATTTTTACTTTCTAAAACATGGAAGTCATCTGTTTCATTACATATAAACAACACTACAATGTTGCAAATAGGTTGTAATCAGCGAGGTTAACACACATCGCTCTCAGGACTGCATAAAGTGTGACCAAAGCCATTTTACCTGCACAGCATGTCACCATCTTTATGTCAATATGTGCTTTTGCTCGAGTATCCCTTCTAGATAAACAGGTGTTGCCCTGTGTTTTATTAGCAGGCATTTGTCATGTCACGCATTGCTTTTTAAAGAAGAACTCTTTTAAGATCGAGCATAAAATGATGGCTGTTTTACATACAAACTTGTTGAGCAGTAGTTTTGACACAAAGGTTGCCATTCTTGAAATCTGAAGCCAATACAGTCGTGTGTATTTATTTACTCCCGCTTCATTCATTACTTTAAACTTCGCCAAACAGGTTGATCAGCATTTGTCTACATGTTTAAAGCGTATGAGAACTGTTAAAGTCATATTTTCCCCTAAAATCAAAATAAGTACTTATATTTGCATTAAGAGGAAGACTCTTTTTAGGACCATTTCGTTTTTTTGCATTGACATTATTTGCATGACAAAAGGACATTACATGATATAAATAATGTATTATAAATAAAAATATAATATGAAAAAATATAATACATTATTTATATCATGTAATGTCCTTTTGTCATGCAAATAGTGTCAATGCAAAAAATCTAAATGGTCCCAAAAAGAGCCTTCCTTTTCTTTATGCAAATATAAGTTCTTATTTTTATTTGGGGGGAAAAATAAATATTAAAAATATATTAAAAAATAGTATAAATAAAAAGATAATATAATGAAAATTTTTTTTTTTAGAATTTTTGCATTGACGTTATTTTCATAATCATTTAAAAAAAAAAATTTTTTTGCATTTTTTTTTTCTTTCTTTTTTTCCATTTACTTGCTCTTTTCCATACAATGGATGTGAGACTTGGAATATAGTGCATGATTTACATTGACTCTTATTATGCTTTTATGGTGCTTTTTGGCCTTGACCACTTCTGGTCTCCATCAACTTTTACTGTATGGAAGAAAACAGTGTGAATATTATCTAAAATATCTACTTTTGCTTTCCATAAAAGAAATAATATCATATAATGTCAACAAAACAGTAGTATCACAATGCAAACATACTTAATGGTCCTAAAATATCTTTAAAGGGATAGTTCATCCAAAAATGAATTTGTCATCATTTACTCACCCTTAGGTTGTTCCAAACCTGTATGAGTTTCTTTCTTCTGTTGAACACAAAAGAAAATATTTTAAAGAATGTTGGTATCTAGAGAGTTGATGGCATCCATTGGCTTCCATAGTAGGAAAAAAAAAAATATGGAAGTCAATTGGTGCCGTCAACTTTCTAGTTACCAACATTCTTTAAAATATTTTCTTTTGTGTTCAACAGAAGAAAGAAACTCATACAGGTTTGGAACAAAATGATGACAACATTTTTGGGTGAATTATCCCTTTAAGTTAAGGAAAATATACATTTTGATTTTGGGGTGAAATGTGACCCAAAGGTTTTGTGTGATTCACCCTTAAATGAATGGAGGAGGAAGAGAGATATTGTGGTGTGAGTCTGTAACAGGAGTGCCCTTGTGACGTGTGCATGTGTTGTGTATGTGTGTGTAGAGGGGGTTGGCCTAGCGACAAGCTCAGGTGTGTTTGAACGGCTCCATAACAGAGAGAGTGAGATTTGAGCGGGGAAGACAGATAGACTAAGAATCTCACCGAATGAAATCAACACCCCTCTAAGAGCAGCAGCAAGAAAAACAGATTAAATCGAACAGATGAAAAGGCCTGAAGGAGATTCAGTTTTCCGGCAAACTCTAAGGTTTTCCAGGAAGTTGGCAAATCTCTGCCTGTCTGGACTCGCTGAGTTGAAGGGGGATCCATCCCCAATGAAGACCACATGGTACTGTCCACTCGACCTGTCCACTGTGTCTGAAATGAAGGAAGACGGTATCATCTACACTGTGGTGGTGAAACAAGGGCACGATTCCCCCACCGTCCCACGGTCCACAGCATCCCGTTCTCAGCACGTCAAAGCAGGGACAGAGGAAAAGCTGGTCCTCCATCTTCTTCATTCCTTCTCCATGGGTGACTCCTCCTTCATCTCCATCTTCCTCTCCACCTATCGCACCTTCACCTCCACACAGAGAGTGCTGGACATCCTGATTGACAGGGCGGTGTGTACGGTGTTCAGCACATGGCTGAGTGACTATCCTGAGGATTTCCGCTCTCTGAGCGATCCCTCCTGCCTGCTGCGGATTGCCCCCCTGCTTCCAACAGACACCTCAGGGGCGGAAATCAAAGGCAGACTGCTGAGGATCGCTGAGGAGCTGAGTGAGAAAACACTGCTGTCTGGCTCACTCTCAGATCCTACCAAAGGCGTGACATCTCCTCCTGATCCCTCGGAGTTTGATGCCACCAGCATCCTGGGGTTTCCATCCAGTGTGATCGCAGAACAGCTGACCAGGATTGAGACAGATCTATTTTTGAAACTGGTGCCCTATCACTGTCTGGGGTCTCTATGGTCTCAGAGAGATAAGAAGGGCCAGGAAGGAGCGTGCTGGTCGGTCAGAGCCACTATCAAGCAGTTTAATCGCTTAACTAACGCCGTCACAGCCTCGTGTTTGTGGAACACGGGTCTGAAGAGCCAACAGAGGGCAAGACTGCTGGAGAAATGGATCAGTGTTGCAGAAGCCTGCAGAACCAGGAAAAACTTCTCCTCACTGTACGCCATTCTATCAGCATTGCAGAGTAACCCAATCCACAGACTGAGAAAGACCTGGCAGGAGACAGACAGGGAAGCTGTGGGGAGATACAAGGAACTTTCTGACATCTTCTCAGAGAAAGACAACTACTCCCAGAGCCGTGAGCTACTCAAAGAGGAGGGGACTTCCAAATTTGCAAACCATGACACTAAAATCAACAACAGGAGATTTACAGGGTCGTGCGCTCAGGGCACTGTGCCATACCTGGGCATCTTCCTCAGAGATCTCACCATGCTGGACACTGCAGTCAAAGACAGATTGGAGAATGGCTTCATTAACTTCGACAAAAGACGACGGGAGTTTGAAGTCATTGCTCAAATTCGCCTCCTTCAGTCCTCATGTAAAAACAGCATTTTCAGAACGGATGAGACGTTTGTTCAGTGGTATCACAGCGTACCCACTCTACGTGAAGAGGAAAGCTACAAGCTGTCCAATCGGATTGAAGCACCGGGCGAGCCGAGTCCTGGCCGTGGCCTGAACCCTACAGTGATAATCACACAGTGTCCAGACTCTCTGTCAGCTGTGGCAAATACAACAATGGATGCTGATGGCATATTTGACTTCCCGTCTCCCGTCAATCACCTGCTCTCCAAGCTTTGCAAGGTCACTAGTAATGATAAAACACCCACTGTAATCAGTTCTGCATTAGAGAAGCACAACCAGAACACTCAAGAAGCCTCCAAATACGAGCTGATCCAACTGCTGCCGGAGGGGAAAGGAAACGCCTTCTATGCCATGTCTTCAGCTAGCGTGGACTTCCTGTTAAGGAGAAGAGGAGGAAACACACCAACAGGGTCTCCGTCTCTTGGCAACGAAACCAGCGCAACCTTCCCACGAATCAGAGCCAAGGGCAGACAACTAGTCCGGACACTATTTTAACAGAAAAACAGGATATTCATGTCCAAGTACTTTCAAAAGAAAAGACACAAAATATTTCATTCAGAGCTCTGTGACGTCTGTGTAGAATTGACTCAAAAATAGTTTTCTTAAGTCCTTATAGTAGTAATTCGAGTGAAAGCTTGGTTGAAATGGCTCTAAGATTTTAGTTACTGCTAAACATTGCACTATTTTTGCATTTCATAAATCCATAATGAATTTCAAGACAGAATCATGTACCTTTTGCTGATGCCAGCATTTTCAGTACTCCCTCCCCCCAGTCTACCTCTAAAGCCCATTGGTTACAGTATATTAGTCAAGAAACCCCATTATTAATGAACATCAAACTGAGAGAGCAGCTAAAAGATCCCAACATGATAAA

Function

symbol description
rgl2 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RGL2 (ral guanine nucleotide dissociation stimulator like 2).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K17636 RGL2; ral guanine nucleotide dissociation stimulator-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01811625_01827803.mRNA False 4113 mRNA 0.41 17 1809757 1828182

Neighbor

gene id symbol gene type direction distance location
CI01000027_01767031_01767683 NA coding upstream 41894 1766607 ~ 1767863 (+)
CI01000027_01572250_01574108 NA coding upstream 235347 1571893 ~ 1574410 (+)
CI01000027_01546280_01571152 NTRK1 coding upstream 238537 1545743 ~ 1571220 (+)
CI01000027_01543335_01543974 NA coding upstream 265528 1543335 ~ 1544229 (+)
CI01000027_01519267_01519711 AFP4, APOA2 coding upstream 289981 1519267 ~ 1519776 (+)
CI01000027_01843365_01850501 FCGR2A coding downstream 15183 1843365 ~ 1850501 (+)
CI01000027_01850735_01853042 NA coding downstream 22553 1850735 ~ 1853513 (+)
CI01000027_01865502_01875022 HPN coding downstream 37320 1865502 ~ 1877374 (+)
CI01000027_01878501_01881301 NA coding downstream 50319 1878501 ~ 1882247 (+)
CI01000027_01926296_01931553 NA coding downstream 97776 1925958 ~ 1931686 (+)
G138594 NA non-coding upstream 16377 1789756 ~ 1793380 (+)
G138573 NA non-coding upstream 52969 1753206 ~ 1756788 (+)
G138541 NA non-coding upstream 60101 1740155 ~ 1749656 (+)
G138545 NA non-coding upstream 65919 1743056 ~ 1743838 (+)
G138519 NA non-coding upstream 105267 1673636 ~ 1704490 (+)
G138558 NA non-coding downstream 5833 1834015 ~ 1840148 (+)
G138554 NA non-coding downstream 58052 1886234 ~ 1889683 (+)
G138549 NA non-coding downstream 62591 1890773 ~ 1903525 (+)
G138610 NA non-coding downstream 81060 1909242 ~ 1909468 (+)
G138515 NA other upstream 132897 1664408 ~ 1676860 (+)
G138436 NA other upstream 301941 1506961 ~ 1507816 (+)
G138290 NA other upstream 810576 995970 ~ 999181 (+)
G138247 NA other upstream 940182 855388 ~ 893121 (+)
G138238 NA other upstream 978074 829774 ~ 831683 (+)
G138915 NA other downstream 1656205 3484387 ~ 3486647 (+)
G138953 NA other downstream 1673890 3502072 ~ 3520065 (+)
G140436 NA other downstream 2909216 4737398 ~ 4774262 (+)
G140440 NA other downstream 2952235 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 3220741 5050310 ~ 5055755 (+)
CI01000027_01413155_01416305 NA coding upstream 341732 1413101 ~ 1417658 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011022 rgl2 coding NC_007127.7 CM002900.2 45364153 ~ 45398408 (-)