CI01000027_01937897_01954661


Basic Information

Item Value
gene id CI01000027_01937897_01954661
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1937754 ~ 1954787 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01937897_01954661.mRNA
CTATAAATCTTCACATGACCATAAAGAGCCAAAGTCTGTGACCGAAAAAACTTGATTCCTCTTAGCCAGAGTCCACAAATGTGTGCCACTTCTCTGTAAAGTACAAAAGAAAACAGGACAGTCCCAGTTTACTAAACAAAAGAATGGAGCCCCAAGAAAACTGGAATACGTCTGAGAAATCAAAGTTGTTGCAGCCTGGGCCACCACCATACCAGGACCATTCTGGACACCCTCCTCCAGGGAGCTTCCCGAGCACCTCTGGGTATCAAGCCCAGCAATATGGAGCTTCAGGACCATACGGCCAAGGACCATATCCAGGTCATCCTGCTATCACCGTGCAGCCGGCAGTTTATTTGACCAATGTTCCACTGGCCTATCCACTGCCAGATTACCTGAGCTACTCCATCTTTACCATGCTGTGCTGCTGTTTACCTCTAGGCATTGTTGCTCTAATTTACTCTCTCAGTACTCGAAATGCCAACATGTCTGGACAACGACAAATAGCAGAGAAAAACTCCAAAATGGCACGCATTATGAACCATATTGCTCTTGGTGTTGGCCTTGCCCTTATTGTGGTGTATATTGTCTGCTTCATGGTGCACATTAGTGGATTATTCCATAAAGGTAACTATATTCTCAGCGTCGCGGCCGACTTATGCCTAAACTACAGTTGTTTACTTCTAGCACAAAGAAAACAGGACAGTCCCAGTTTACTAAACAGAACAATGGAGCCCCAAGAAAACTGGAATACATCTGAGAAATCAAAGTTGTTGCAGCCTGGGCCACCACCATACCAGGACCATTCTGGACACCCTCCTCCAGGGAGCTTCCCGAGCACCTCTGGGTATCAAGCCCAGCAATATGGAGCTTCAGGACCATACGGCCAAGGACCATATCCAGGTCATCCTGCTGTTACCGTGCAGCCGGCAGTTTATTTGACCAACATTCCACTGGCCTATCCACTGCCAGATTACCTGTGCTACTCCATCTTTACCATGCTGTGCTGCTGTTTACCTCTGGGAATTGTTGCTCTAATTTACTCTATCAATACTCGGAATGCCAACATGTCCGGACAACAACAAATAGCAGAGAACAACTCCAAAATGGCGCTCACTGTGAACCATATTGCTCTTGGTATTGGCCTTGCCCTCTTTGTGGTGTATATCGCCTGCGTCATTGTGGGTCATTGTGTAACCACAGGGTGGCTCCCGCAGTCATACAGTATGACGGGAACAGTGCCAAAGTTCTTGTCACTCCCTACAACCTACAGCTCCCCTCCCACTCATCACCAAAGTGGCTGGAATTCAACTGAGAAATCAGGGATGCTGCAGCCTACATCCCCACCACCAGCATACCAGGACAATCCTGCTGGGTACCCTCCTTCCTATCCAAGCCAGCCAGTTCCCCAGGGCCCCTATGTCCAAGGACCATATCCAGGGCAATCCGTGGTCGCCGTGCAGCCTGCAGTTTTTGTGACCGCTGCTCCACTGGCCAATCCACAGCCAGATTACCTGTGCTATTCCATCTTTACCATGCTGTGCTGCTGCTTTCCTCTGGGCATCGCTGCACTGGTTTTCTCCTGCTCTACTCGAAATGCCAACCACTCAGGACAGCAAGTATTAGCAGAGAAGAACTCCAAAACGGCACGTACCCTGAATCATGTCAGCGTTGCACTTGGCATTTTCTTTACTGTATTGTTTATTGTCTTAGAGTTTGTGGTTTTTAAGAAGAGATAACAGCTATTATAGCTGTCATGGTTGGATGCAGATTACAAACAGAGTTCTCTGCATTTAAATGCCATTTTACTTAAAACAAAGCTGGTTAATGTTATGTTGAAAACAACAAAAGCTTTGATTGGCCAA
>TU157420
CTGAGAAATCAAAGTTGTTGCAGCCTGGGCCACCACCATACCAGGACCATTCTGGACACCCTCCTCCAGGGAGCTTCCCGAGCACCTCTGGGTATCAAGCCCAGCAATATGGAGCTTCAGGACCATACGGCCAAGGACCATATCCAGGTCATCCTGCTGTTACCGTGCAGCCGGCAGTTTATTTGACCAACATTCCACTGGCCTATCCACTGCCAGATTACCTGTGCTACTCCATCTTTACCATGCTGTGCTGCTGTTTACCTCTGGGAATTGTTGCTCTAATTTACTCTATCAATACTCGGAATGCCAACATGTCCGGACAACAACAAATAGCAGAGAACAACTCCAAAATGGCGCTCACTGTGAACCATATTGCTCTTGGTATTGGCCTTGCCCTCTTTGTGGTGTATATCGCCTGCGTCATTGTGGTGTCTGTAAATAGTCAGCAAGAAATAACACCTCCATAATTGTCATAGATATCATAGTTGGACAACAGGAATGAGGGCTTTCCAAAAATAGCATTATATAATGCCACAAGTATAATTTTATAACCACATTGTGATGTTTTTTAGATTACAAACATACTATTGTGCATTTTCGTATGATTGACTGTTTGATCTGTCTGGCTAATCTCTAATGTAAAATTATTAATGTAACTAAAACATGCTTTAAAGTTGATTATCTTATGTTTCAAAACAATGTAAACTGTGACTGTCAAAGTAGATATTGATATTTGTTTTTTCCTCCTGTCTTTAGATTATATTTAATTATAACTTTCAATGACCAAAAACAAGTGCTCTTTTTCTTTTTTATAACCATTGATGTTGTCATCTAAATACTCTCTATTCAGATACCCGAATAAATCAGTCTTATGAGCCGGTTCTTAGAAAATCAAAAACACATACCGAATTAATCTAACTGACATACTTAACCACAATACCTTAGTTATGTCCTATTTGAAATGAACTGAGGACTGTTATTTAGCTATTTGGAATCCTAAAAAGATGCAACTCACGGTTTTAGAAGTTCAAAGTCACTTATAATACACACACATGGCCACGTTGAGCCCTTTAAAAGCCCACCGGCAACTATAGTTGCCGCAGAGTATAGTTGTCATTTTCCTTTTGTAAGAATTTTTCTAGATGTTATCCATGTTTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01937897_01954661.mRNA False 1862 mRNA 0.47 8 1937754 1954787
TU157420 True 1159 lncRNA 0.38 3 1937925 1949609

Neighbor

gene id symbol gene type direction distance location
CI01000027_01926296_01931553 NA coding upstream 6068 1925958 ~ 1931686 (+)
CI01000027_01878501_01881301 NA coding upstream 55507 1878501 ~ 1882247 (+)
CI01000027_01865502_01875022 HPN coding upstream 60815 1865502 ~ 1877374 (+)
CI01000027_01850735_01853042 NA coding upstream 84241 1850735 ~ 1853513 (+)
CI01000027_01843365_01850501 FCGR2A coding upstream 87253 1843365 ~ 1850501 (+)
CI01000027_01976509_01978931 NA coding downstream 21661 1976448 ~ 1980721 (+)
CI01000027_01982332_01985064 NA coding downstream 27247 1982034 ~ 1985157 (+)
CI01000027_01998746_02018404 NA coding downstream 43885 1998672 ~ 2018789 (+)
CI01000027_02034579_02038173 NA coding downstream 79573 2034360 ~ 2039054 (+)
CI01000027_02040721_02047487 NA coding downstream 85834 2040621 ~ 2047566 (+)
G138612 NA non-coding upstream 26203 1911283 ~ 1911551 (+)
G138610 NA non-coding upstream 28286 1909242 ~ 1909468 (+)
G138549 NA non-coding upstream 34229 1890773 ~ 1903525 (+)
G138554 NA non-coding upstream 48071 1886234 ~ 1889683 (+)
G138625 NA non-coding downstream 6765 1961552 ~ 1961856 (+)
G138627 NA non-coding downstream 10545 1965332 ~ 1965606 (+)
G138686 NA non-coding downstream 97793 2052580 ~ 2052935 (+)
G138672 NA non-coding downstream 122293 2077080 ~ 2082052 (+)
G138693 NA non-coding downstream 164411 2119198 ~ 2119793 (+)
G138515 NA other upstream 260894 1664408 ~ 1676860 (+)
G138436 NA other upstream 429938 1506961 ~ 1507816 (+)
G138290 NA other upstream 938573 995970 ~ 999181 (+)
G138247 NA other upstream 1068179 855388 ~ 893121 (+)
G138238 NA other upstream 1106071 829774 ~ 831683 (+)
G138915 NA other downstream 1529600 3484387 ~ 3486647 (+)
G138953 NA other downstream 1547285 3502072 ~ 3520065 (+)
G140436 NA other downstream 2782611 4737398 ~ 4774262 (+)
G140440 NA other downstream 2825630 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 3094136 5050310 ~ 5055755 (+)

Expression


Co-expression Network