XLOC_008517 (poldip2)


Basic Information

Item Value
gene id XLOC_008517
gene name poldip2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24676905 ~ 24690260 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017034
CTTTGTGTTGTAACTTATGCCGACAACTTCCGGTCGCGGTGCGTTATGGGAAATTGTGTGCGACTTTGTACACTTCAATATTGCAATAAAAGGGTCCAaactcatttaaatgtaatttcaaactttagtttttcAATCTTTCTGAATTGTGTGGGTTTAGAATATGATTTTGGGTTTTGAAAACAAATGATACTGACTGCACCCGTGTGTTCATGTGCCGATAGCTGAAGGAAGATGGCAGCGTGTGCAATACGTCGGGGCTTATTGTCCACTGCAAGTAAATATAACCAGCACAAATGCACTCACAGAATATTAAGTGCGATAGACTTCAACAGCGGGTTAGATCCGAAAAGACCCCAGTCGCTGTGTTCATCTTGCGGCTCGTCCAGTTTTCAACAGACGAGGTTCATGTCATCTCGAAACAGACCAGAGGGGAAAATACTGGAAGCTGTTGGAGTATTTGAAGCCCTGAAGCAGCATGGGAAATATGAAACAGGACAGCTCTTCCTGCACAGTGTTTTTGGATATAGAGGAATTGTGTTATTCCCGTGGCACGCTCGTCTTTATGATCGCGATGTGAGTCCTGCTACCACTGACAGtaagccAGACTCTACAGGTCATGGATCCAAAGAGGTGAAGGGTAAAATGCACACGTACTACCAGGTCCTCATAGACACCAGAGACTGTCCTCATATATCCCAGCGTTCTCAGACTGAAGCAGTTACGTTCCTGGCTAATCATGATGATAGTAGAGCACTGTATGCAATTCCAGGTCTGGATTATGTGAGTCACGAAGACATCCTGCCTTACAACTCCACTGAACAAGTTCCTATCCAGCATGAGCTGTTTGAACGTTTCCTAATGTTTAACCCCTCCAGAAaTCCTCCGTTTACTGCGAGAGATACCTTACGGGCCTGGCAGGAGAAGAACCATCCCTGGCTGGAGCTGTCAGATGTGCACCGAGAAACCACAGAGAACATCCGTGTCACCGTCATCCCCTTCTACATGGGCATGAGAGAAGCTCAAAACTCCCATGTgtattggTGGCGTTATTGCATCCGTCTGGAGAACCTGGGCAATGAGGTGGTTCAGCTCAGGGAAAGACATTGGAGGATCTTCAGTCTCTCTGGGACTCTGGAAACAGTCCGTGGAAGAGGAGTGGTTGGCAAGGAGCCTGTTTTGTCAAGAGAACAGCCGGCGTTTCAGTACAGCAGTCATGTTTCACTTCAAGCACCCAGTGGACACATGTGGGGGACGTTCTGCTTTGAGAGGACAGATGGCTCACACTTTGACGTGCGCATTCCACCTTTTTCATTAGAAAGCAATAAGTATGACAAAGCTCCCCCTACTGGCTATCCCTTGTAGTAAGCCTACCGTCACGGATTGGCTCAGCGTCCCTACAGGCTGTTCCCTTGGAGATCCATGTTTTACCTTCCTTATCACTGTTCCTTAAATATACAATGGTTTTTAGCTAAGCGTCCTCCAGACTCTGACTGCAGCACGGGGGATTTGAAACAACCGCATATCTTAAAAAGAAAAGGCATAGCAAGTTGCAATGAGGGTTGATCTTATTAAGTAGTGAGCAAGAGTGTGAAGGGAACATGGACAGATCCTCTCAAACCCTTGCACAGAGAAAGGCCGTGCTGAAAGAATTTGAATATGATttgttgttttctatttatttggaCGGCTGTGTTGAACAACTGAATAAGCTTATTAGTGTTAATTAAGCATATTGCAATTTATCCCTAAGTTCAAACCCCCATTTAGTTAATTCCTTATATTCTGGAGAAAGATTTCAGTGTATATACATTGAATGTTTTCTCCAAATGCCTAATTAGACTAATTAAAGGCTTGCTGCAAAGATTACACTAAGGCTATCCCAAAGTCAGCCAGTGAAATGTGGTTTGACTAAGAAAGCCAAGTGGGACGAAACCGTATTAGAGATCACCTTCACACCAACTTTTCATCATGGATTTTGATTAAACTGTTGGATGATGAACTGCTTTACTGTTCACtgtaaatatgtttgtaaaagcataaataaaatgacatttccAGA
>TCONS_00017035
TGTAACTTATGCCGACAACTTCCGGTCGCGGTGCGTTATGGGAAATTGTGTGCGACTTTGTACACTTCAATATTGCAATAAAAGGGTCCAaactcatttaaatAAACAGACCAGAGGGGAAAATACTGGAAGCTGTTGGAGTATTTGAAGCCCTGAAGCAGCATGGGAAATATGAAACAGGACAGCTCTTCCTGCACAGTGTTTTTGGATATAGAGGAATTGTGTTATTCCCGTGGCACGCTCGTCTTTATGATCGCGATGTGAGTCCTGCTACCACTGACAGtaagccAGACTCTACAGGTCATGGATCCAAAGAGGTGAAGGGTAAAATGCACACGTACTACCAGGTCCTCATAGACACCAGAGACTGTCCTCATATATCCCAGCGTTCTCAGACTGAAGCAGTTACGTTCCTGGCTAATCATGATGATAGTAGAGCACTGTATGCAATTCCAGGTCTGGATTATGTGAGTCACGAAGACATCCTGCCTTACAACTCCACTGAACAAGTTCCTATCCAGCATGAGCTGTTTGAACGTTTCCTAATGTTTAACCCCTCCAGAAaTCCTCCGTTTACTGCGAGAGATACCTTACGGGCCTGGCAGGAGAAGAACCATCCCTGGCTGGAGCTGTCAGATGTGCACCGAGAAACCACAGAGAACATCCGTGTCACCGTCATCCCCTTCTACATGGGCATGAGA
>TCONS_00018961
TGTAACTTATGCCGACAACTTCCGGTCGCGGTGCGTTATGGGAAATTGTGTGCGACTTTGTACACTTCAATATTGCAATAAAAGGGTCCAaactcatttaaatAAACAGACCAGAGGGGAAAATACTGGAAGCTGTTGGAGTATTTGAAGCCCTGAAGCAGCATGGGAAATATGAAACAGGACAGCTCTTCCTGCACAGTGTTTTTGGATATAGAGGAATTGTGTTATTCCCGTGGCACGCTCGTCTTTATGATCGCGATGTGAGTCCTGCTACCACTGACAGtaagccAGACTCTACAGGTCATGGATCCAAAGAGGTGAAGGGTAAAATGCACACGTACTACCAGGTCCTCATAGACACCAGAGACTGTCCTCATATATCCCAGCGTTCTCAGACTGAAGCAGTTACGTTCCTGGCTAATCATGATGATAGTAGAGCACTGTATGCAATTCCAGGTCTGGATTATGTGAGTCACGAAGACATCCTGCCTTACAACTCCACTGAACAAGTTCCTATCCAGCATGAGCTGTTTGAACGTTTCCTAATGTTTAACCCCTCCAGAAaTCCTCCGTTTACTGCGAGAGATACCTTACGGGCCTGGCAGGAGAAGAACCATCCCTGGCTGGAGCTGTCAGATGTGCACCGAGAAACCACAGAGAACATCCGTGTCACCGTCATCCCCTTCTACATGGGCATGAGAGAAGCTCAAAACTCCCATGTgtattggTGGCGTTATTGCATCCGTCTGGAGAACCTGGGCAATGAGGTGGTTCAGCTCAGGGAAAGACATTGGAGGATCTTCAGTCTCTCTGGGACTCTGGAAACAGTCCGTGGAAGAGGAGTGGTTGGCAAGGAGCCTGTTTTGTCAAGAGAACAGCCGGCGTTTCAGTACAGCAGTCATGTTTCACTTCAAGCACCCAGTGGACACATGTGGGGGACGTTCTGCTTTGAGAGGACAGATGGCTCACACTTTGACGTGCGCATTCCACCTTTTTCATTAGAAAGCAATAAGTATGACAAAGCTCCCCCTACTGGCTATCCCTTGTAGTAAGCCTACCGTCACGGATTGGCTCAGCGTCCCTACAGGCTGTTCCCTTGGAGATCCATGTTTTACCTTCCTTATCACTGTTCCTTAAATATACAATGGTTTTTAGCTAAGCGTCCTCCAGACTCTGACTGCAG
>TCONS_00017036
ACTTATGCCGACAACTTCCGGTCGCGGTGCGTTATGGGAAATTGTGTGCGACTTTGTACACTTCAATATTGCAATAAAAGGGTCCAaactcatttaaatCTGAAGGAAGATGGCAGCGTGTGCAATACGTCGGGGCTTATTGTCCACTGCAAGTAAATATAACCAGCACAAATGCACTCACAGAATATTAAGTGCGATAGACTTCAACAGCGGGTTAGATCCGAAAAGACCCCAGTCGCTGTGTTCATCTTGCGGCTCGTCCAGTTTTCAACAGACGAGGTTCATGTCATCTCGAAACAGACCAGAGGGGAAAATACTGGAAGCTGTTGGAGTATTTGAAGCCCTGAAGCAGCATGGGAAATATGAAACAGGACAGCTCTTCCTGCACAGTGTTTTTGGATATAGAGGAATTGTGTTATTCCCGTGGCACGCTCGTCTTTATGATCGCGATGTGAGTCCTGCTACCACTGACAGtaagccAGACTCTACAGGTCATGGATCCAAAGAGGTGAAGGGTAAAATGCACACGTACTACCAGGTCCTCATAGACACCAGAGACTGTCCTCATATATCCCAGCGTTCTCAGACTGAAGCAGTTACGTTCCTGGCTAATCATGATGATAGTAGAGCACTGTATGCAATTCCAGGTCTGGATTATGTGAGTCACGAAGACATCCTGCCTTACAACTCCACTGAACAAGTTCCTATCCAGCATGAGCTGTTT
>TCONS_00017037
TGCACAGTGTTTTTGGATATAGAGGAATTGTGTTATTCCCGTGGCACGCTCGTCTTTATGATCGCGATGTGAGTCCTGCTACCACTGACAGtaagccAGACTCTACAGGTCATGGATCCAAAGAGGTGAAGGGTAAAATGCACACGTACTACCAGGTCCTCATAGACACCAGAGACTGTCCTCATATATCCCAGCGTTCTCAGACTGAAGCAGTTACGTTCCTGGCTAATCATGATGATAGTAGAGCACTGTATGCAATTCCAGGTCTGGATTATGTGAGTCACGAAGACATCCTGCCTTACAACTCCACTGAACAAGTTCCTATCCAGCATGAGCTGTTTGAACGTTTCCTAATGTTTAACCCCTCCAGAAaTCCTCCGTTTACTGCGAGAGATACCTTACGGGCCTGGCAGGAGAAGAACCATCCCTGGCTGGAGCTGTCAGATGTGCACCGAGAAACCACAGAGAACATCCGTGTCACCGTCATCCCCTTCTACATGGGCATGAGAGAAGCTCAAAACTCCCATGTgtattggTGGCGTTATTGCATCCGTCTGGAGAACCTGGGCAATGAGGTGGTTCAGCTCAGGGAAAGACATTGGAGGATCTTCAGTCTCTCTGGGACTCTGGAAACAGTCCGTGGAAGAGGAGTGGTTGGCAAGGAGCCTGTTTTGTCAAGAGAACAGCCGGCGTTTCAGTACAGCAGTCATGTTTCACTTCAAGCACCCAGTGGACACATGTGGTGAGATTATCAACATGTTGACATAAATGCGTTATTCTAGCTTAATGTTTAATAGAAGCATTAATAGAAGAAATTAGCTTAGATTTTGAATAATGTGGGGTTTAGACTACACAATATTCTGTTTTTGGCACAATGTCTTTGATGTAGGGTGTTGCTGTGATATGTAAATCACAAtacgatgc
>TCONS_00017038
AATCATGATGATAGTAGAGCACTGTATGCAATTCCAGGTCTGGATTATGTGAGTCACGAAGACATCCTGCCTTACAACTCCACTGAACAAGTTCCTATCCAGCATGAGCTGTTTGAACGTTTCCTAATGTTTAACCCCTCCAGAAGTAACTAGTCATCATCTTCTCATTAGTATTAATATCAGTCCTGAGTCTGATAATAAATttcattgcatttattttgtttctttagaTCCTCCGTTTACTGCGAGAGATACCTTACGGGCCTGGCAGGAGAAGAACCATCCCTGGCTGGAGCTGTCAGATGTGCACCGAGAAACCACAGAGAACATCCGTGTCACCGTCATCCCCTTCTACATGGGCATGAGAGAAGCTCAAAACTCCCATGTgtattggTGGCGTTATTGCATCCGTCTGGAGAACCTGGGCAATGAGGTGGTTCAGCTCAGGGAAAGACATTGGAGGATCTTCAGTCTCTCTGGGACTCTGGAAACAGTCCGTGGAAGAGGAGTGGTTGGCAAGGAGCCTGTTTTGTCAAGAGAACAGCCGGCGTTTCAGTACAGCAGTCATGTTTCACTTCAAGCACCCAGTGGACACATGTGGGGGACGTTCTGCTTTGAGAGGACAGATGGCTCACACTTTGACGTGCGCATTCCACCTTTTTCATTAGAAAGCAATAAGTATGACAAAGCTCCCCCTACTGGCTATCCCTTGTAGTAAGCCTACCGTCACGGATTGGCTCAGCGTCCCTACAGGCTGTTCCCTTGGAGATCCATGTTTTACCTTCCTTATCACTGTTCCTTAAATATACAATGGTTTTTAGCTAAGCGTCCTCCAGACTCTGACTGCAG

Function

symbol description
poldip2 Predicted to enable DNA binding activity. Predicted to be involved in error-free translesion synthesis. Predicted to be active in mitochondrial nucleoid and nucleus. Orthologous to human POLDIP2 (DNA polymerase delta interacting protein 2).

GO:

id name namespace
GO:0070987 error-free translesion synthesis biological_process
GO:0005634 nucleus cellular_component
GO:0042645 mitochondrial nucleoid cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-5881 Predicted to enable DNA binding activity. Predicted to be involved in error-free translesion synthesis. Predicted to be active in mitochondrial nucleoid and nucleus. Orthologous to human POLDIP2 (DNA polymerase delta interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000092305

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017034 False 2062 mRNA 0.44 11 24676905 24690260
TCONS_00017035 False 701 processed_transcript 0.47 7 24676913 24683290
TCONS_00018961 False 1183 lncRNA 0.48 11 24676913 24689697
TCONS_00017036 False 724 mRNA 0.46 7 24676917 24683037
TCONS_00017037 False 924 lncRNA 0.46 8 24679659 24686682
TCONS_00017038 True 849 lncRNA 0.47 6 24681496 24689697

Neighbor

gene id symbol gene type direction distance location
XLOC_008516 smtnl coding upstream 5486 24644016 ~ 24671419 (+)
XLOC_008515 NA coding upstream 58261 24616570 ~ 24618644 (+)
XLOC_008514 dhrs13b.1 coding upstream 75814 24572926 ~ 24601091 (+)
XLOC_008513 dhrs13b.1 coding upstream 107843 24563504 ~ 24569062 (+)
XLOC_008512 phf12b coding upstream 113863 24549054 ~ 24563042 (+)
XLOC_008518 LRRC75A coding downstream 828 24691088 ~ 24744920 (+)
XLOC_008519 ywhae1 coding downstream 56184 24746444 ~ 24754895 (+)
XLOC_008520 cpda coding downstream 66600 24756860 ~ 24794610 (+)
XLOC_008521 gosr1 coding downstream 105213 24795473 ~ 24837655 (+)
XLOC_008522 NA coding downstream 151031 24841291 ~ 24844913 (+)
XLOC_008463 BX663520.1 misc upstream 3424623 21252191 ~ 21252282 (+)
XLOC_008511 NA non-coding upstream 363783 24312556 ~ 24313122 (+)
XLOC_008508 NA non-coding upstream 470924 24179932 ~ 24205981 (+)
XLOC_008509 NA non-coding upstream 478408 24191710 ~ 24198497 (+)
XLOC_008507 NA non-coding upstream 514805 24149968 ~ 24162100 (+)
XLOC_008523 CR942805.1 non-coding downstream 271876 24962136 ~ 24962252 (+)
XLOC_008524 NA non-coding downstream 317295 25007555 ~ 25053314 (+)
XLOC_008525 BX908796.2 non-coding downstream 338222 25028482 ~ 25054730 (+)
XLOC_008526 BX908796.1 non-coding downstream 365701 25055961 ~ 25062073 (+)

Expression


Co-expression Network